miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 43447 0.73 0.172048
Target:  5'- -aGggGUGCCGCGCUGcUGagcgaugacGUCACGCa -3'
miRNA:   3'- gaCuuCGCGGCGCGACuAC---------CGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 40610 0.72 0.196948
Target:  5'- -cGAGGgGCCuGUGCUGAcGGCCGCu- -3'
miRNA:   3'- gaCUUCgCGG-CGCGACUaCCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 11886 0.71 0.243302
Target:  5'- cCUGAGcGCGCCGaGUUcAUGGCCAgGCg -3'
miRNA:   3'- -GACUU-CGCGGCgCGAcUACCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 34684 0.71 0.239532
Target:  5'- gCUGAcuuucgaugucaacaGGCGCCG-GUUGcAUGGCCACGg -3'
miRNA:   3'- -GACU---------------UCGCGGCgCGAC-UACCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 46685 0.72 0.202291
Target:  5'- cCUGGAGCGCCGcCGCUGccugcuuccGGCCAg-- -3'
miRNA:   3'- -GACUUCGCGGC-GCGACua-------CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 37848 0.72 0.213356
Target:  5'- cCUGGuAGCGCUgccuGCGCUGGccGGCCAgACg -3'
miRNA:   3'- -GACU-UCGCGG----CGCGACUa-CCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 4109 0.71 0.256228
Target:  5'- gCUGGaguugGGCGCCGCGCUGGgacuccaGcGCCGCu- -3'
miRNA:   3'- -GACU-----UCGCGGCGCGACUa------C-CGGUGug -5'
11411 3' -58.1 NC_003085.1 + 32813 0.7 0.269023
Target:  5'- gUGAAGCagcggcuGUCGCGaCUGAUuggggcccgagaGGCCGCGCg -3'
miRNA:   3'- gACUUCG-------CGGCGC-GACUA------------CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 23306 0.67 0.455507
Target:  5'- aUGggGUGCCGCuGgaGAUG-CUugACg -3'
miRNA:   3'- gACuuCGCGGCG-CgaCUACcGGugUG- -5'
11411 3' -58.1 NC_003085.1 + 932 0.67 0.455507
Target:  5'- cCUGGAGCgucgGCCGCGUccgGGUG-CCAgACa -3'
miRNA:   3'- -GACUUCG----CGGCGCGa--CUACcGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 18832 0.67 0.454515
Target:  5'- cCUGAGGaguacuaCGCCGCGCUGAaguucguguucGGCCAg-- -3'
miRNA:   3'- -GACUUC-------GCGGCGCGACUa----------CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 17139 0.67 0.445642
Target:  5'- aCUGGacGGCGUcugcuacuggCGCGCUGAggcggacgUGGCC-CACc -3'
miRNA:   3'- -GACU--UCGCG----------GCGCGACU--------ACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 38068 0.67 0.435897
Target:  5'- gUGguGCGUCGCGgaGAcGGCaGCGCa -3'
miRNA:   3'- gACuuCGCGGCGCgaCUaCCGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 18104 0.67 0.425322
Target:  5'- -gGAAGCgGCUGCGCaUGgcGGCCuaccgguacguccGCGCg -3'
miRNA:   3'- gaCUUCG-CGGCGCG-ACuaCCGG-------------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 25221 0.67 0.40742
Target:  5'- gCUGGuaccucaucaccGGCGCCGCcCUGGUGcGCUcCGCg -3'
miRNA:   3'- -GACU------------UCGCGGCGcGACUAC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 42496 0.66 0.516988
Target:  5'- gUGAGGCGaauCGCcgGAUGGCUucGCACg -3'
miRNA:   3'- gACUUCGCggcGCGa-CUACCGG--UGUG- -5'
11411 3' -58.1 NC_003085.1 + 12818 0.67 0.406492
Target:  5'- cCUGAcgguccgGGCGgaUGCGCUGuUGGCCGC-Ca -3'
miRNA:   3'- -GACU-------UCGCg-GCGCGACuACCGGUGuG- -5'
11411 3' -58.1 NC_003085.1 + 13098 0.68 0.389095
Target:  5'- aCUGGcaCGCCGCGCUGA-GGUgcgugaGCGCg -3'
miRNA:   3'- -GACUucGCGGCGCGACUaCCGg-----UGUG- -5'
11411 3' -58.1 NC_003085.1 + 10725 0.68 0.389095
Target:  5'- gCUGAcggcaagcGGaCGCUGuUGCUGuccGGCCACACg -3'
miRNA:   3'- -GACU--------UC-GCGGC-GCGACua-CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 38131 0.69 0.321395
Target:  5'- gUGAGGCucGCCgcccugcugGCGUUGGUGGUgGCGCu -3'
miRNA:   3'- gACUUCG--CGG---------CGCGACUACCGgUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.