miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 45225 0.67 0.454515
Target:  5'- -cGAAGCGCUGCggcccgGCUGAcGcucagcguaacccGCCGCGCg -3'
miRNA:   3'- gaCUUCGCGGCG------CGACUaC-------------CGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 19518 0.66 0.49609
Target:  5'- gCUGGAGgGCCuGUGCc-AUGGCCAUcuGCu -3'
miRNA:   3'- -GACUUCgCGG-CGCGacUACCGGUG--UG- -5'
11411 3' -58.1 NC_003085.1 + 45761 0.74 0.145908
Target:  5'- gUGGcaCGUCGCGCUGcGUGGCCGCAUc -3'
miRNA:   3'- gACUucGCGGCGCGAC-UACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 19221 0.69 0.321395
Target:  5'- gCUG-GGCGCCGCGCaa--GGCCuGCGCc -3'
miRNA:   3'- -GACuUCGCGGCGCGacuaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 40502 0.67 0.426277
Target:  5'- -cGAGGCcgcggcccuugGCCcaGCGCaGGuUGGCCACGCg -3'
miRNA:   3'- gaCUUCG-----------CGG--CGCGaCU-ACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 11441 0.66 0.49609
Target:  5'- -gGAAGCgGUCGcCGUUGG-GGCCgACGCg -3'
miRNA:   3'- gaCUUCG-CGGC-GCGACUaCCGG-UGUG- -5'
11411 3' -58.1 NC_003085.1 + 5302 0.69 0.329356
Target:  5'- -cGAAGuCGCCucccuccgcgaGCGC--GUGGCCACGCu -3'
miRNA:   3'- gaCUUC-GCGG-----------CGCGacUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 31491 0.66 0.49609
Target:  5'- cCUGcGGC-CCGCGCUGccggcgcuucagGUGGCCcCAg -3'
miRNA:   3'- -GACuUCGcGGCGCGAC------------UACCGGuGUg -5'
11411 3' -58.1 NC_003085.1 + 22033 0.66 0.49609
Target:  5'- -cGAAGgGCUGCGCUGuaccggcgauUGcGCC-CGCg -3'
miRNA:   3'- gaCUUCgCGGCGCGACu---------AC-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 44283 0.67 0.455507
Target:  5'- ---cGGCGCCGCccugccuuccGCgccagGAUGGCCGCu- -3'
miRNA:   3'- gacuUCGCGGCG----------CGa----CUACCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 47168 0.67 0.416784
Target:  5'- -aGGccAGCGCCGUGCUGccgGaGCC-CGCg -3'
miRNA:   3'- gaCU--UCGCGGCGCGACua-C-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 563 0.68 0.380138
Target:  5'- -cGAGGCGgCGCgGCUGGcgGGCCAaUGCu -3'
miRNA:   3'- gaCUUCGCgGCG-CGACUa-CCGGU-GUG- -5'
11411 3' -58.1 NC_003085.1 + 35398 0.7 0.305148
Target:  5'- -cGAGGCGCU-CGCaGAUGGCCucgacggACACg -3'
miRNA:   3'- gaCUUCGCGGcGCGaCUACCGG-------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 31537 0.72 0.20776
Target:  5'- --aGAGCGCCGCGCUG--GGCgCAgGCa -3'
miRNA:   3'- gacUUCGCGGCGCGACuaCCG-GUgUG- -5'
11411 3' -58.1 NC_003085.1 + 35172 0.75 0.126947
Target:  5'- aCUGAGggcuGCGCgGCGCuUGAcggcagcagccUGGCCGCACg -3'
miRNA:   3'- -GACUU----CGCGgCGCG-ACU-----------ACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 25772 0.67 0.455507
Target:  5'- -gGAGGCuGCUGCGCg---GGCC-CGCu -3'
miRNA:   3'- gaCUUCG-CGGCGCGacuaCCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 47800 0.66 0.495055
Target:  5'- gUGAcGuCGCCGCGUUGGUaguagggacggcaGGCCAUg- -3'
miRNA:   3'- gACUuC-GCGGCGCGACUA-------------CCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 8187 0.66 0.475583
Target:  5'- gCUG-GGCGCUGUGC--AUGGCC-CGCc -3'
miRNA:   3'- -GACuUCGCGGCGCGacUACCGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 3674 0.66 0.465489
Target:  5'- -cGAGGUugaccucgaGuuGCGUUGGgaugcGGCCACGCa -3'
miRNA:   3'- gaCUUCG---------CggCGCGACUa----CCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 38131 0.69 0.321395
Target:  5'- gUGAGGCucGCCgcccugcugGCGUUGGUGGUgGCGCu -3'
miRNA:   3'- gACUUCG--CGG---------CGCGACUACCGgUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.