miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 3' -58.1 NC_003085.1 + 48972 0.71 0.230924
Target:  5'- ----cGCGCCuucaucuccGCGCUGAUGGCCgucguGCGCu -3'
miRNA:   3'- gacuuCGCGG---------CGCGACUACCGG-----UGUG- -5'
11411 3' -58.1 NC_003085.1 + 48746 0.66 0.474569
Target:  5'- aCUGAGGCGCgGguggaccUGCUca-GGCCGCGCc -3'
miRNA:   3'- -GACUUCGCGgC-------GCGAcuaCCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 47800 0.66 0.495055
Target:  5'- gUGAcGuCGCCGCGUUGGUaguagggacggcaGGCCAUg- -3'
miRNA:   3'- gACUuC-GCGGCGCGACUA-------------CCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 47168 0.67 0.416784
Target:  5'- -aGGccAGCGCCGUGCUGccgGaGCC-CGCg -3'
miRNA:   3'- gaCU--UCGCGGCGCGACua-C-CGGuGUG- -5'
11411 3' -58.1 NC_003085.1 + 46977 1.09 0.000392
Target:  5'- gCUGAAGCGCCGCGCUGAUGGCCACACu -3'
miRNA:   3'- -GACUUCGCGGCGCGACUACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 46685 0.72 0.202291
Target:  5'- cCUGGAGCGCCGcCGCUGccugcuuccGGCCAg-- -3'
miRNA:   3'- -GACUUCGCGGC-GCGACua-------CCGGUgug -5'
11411 3' -58.1 NC_003085.1 + 45761 0.74 0.145908
Target:  5'- gUGGcaCGUCGCGCUGcGUGGCCGCAUc -3'
miRNA:   3'- gACUucGCGGCGCGAC-UACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 45225 0.67 0.454515
Target:  5'- -cGAAGCGCUGCggcccgGCUGAcGcucagcguaacccGCCGCGCg -3'
miRNA:   3'- gaCUUCGCGGCG------CGACUaC-------------CGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 44283 0.67 0.455507
Target:  5'- ---cGGCGCCGCccugccuuccGCgccagGAUGGCCGCu- -3'
miRNA:   3'- gacuUCGCGGCG----------CGa----CUACCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 43447 0.73 0.172048
Target:  5'- -aGggGUGCCGCGCUGcUGagcgaugacGUCACGCa -3'
miRNA:   3'- gaCuuCGCGGCGCGACuAC---------CGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 42496 0.66 0.516988
Target:  5'- gUGAGGCGaauCGCcgGAUGGCUucGCACg -3'
miRNA:   3'- gACUUCGCggcGCGa-CUACCGG--UGUG- -5'
11411 3' -58.1 NC_003085.1 + 41322 0.68 0.39819
Target:  5'- cCUGAuGCGCgGCGCuUGAgcaGGuCCACcACg -3'
miRNA:   3'- -GACUuCGCGgCGCG-ACUa--CC-GGUG-UG- -5'
11411 3' -58.1 NC_003085.1 + 40610 0.72 0.196948
Target:  5'- -cGAGGgGCCuGUGCUGAcGGCCGCu- -3'
miRNA:   3'- gaCUUCgCGG-CGCGACUaCCGGUGug -5'
11411 3' -58.1 NC_003085.1 + 40502 0.67 0.426277
Target:  5'- -cGAGGCcgcggcccuugGCCcaGCGCaGGuUGGCCACGCg -3'
miRNA:   3'- gaCUUCG-----------CGG--CGCGaCU-ACCGGUGUG- -5'
11411 3' -58.1 NC_003085.1 + 39597 0.72 0.224936
Target:  5'- gCUGGAGCGCguCGCGgaGcgcaccgagcagGUGGCCGCAg -3'
miRNA:   3'- -GACUUCGCG--GCGCgaC------------UACCGGUGUg -5'
11411 3' -58.1 NC_003085.1 + 38131 0.69 0.321395
Target:  5'- gUGAGGCucGCCgcccugcugGCGUUGGUGGUgGCGCu -3'
miRNA:   3'- gACUUCG--CGG---------CGCGACUACCGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 38068 0.67 0.435897
Target:  5'- gUGguGCGUCGCGgaGAcGGCaGCGCa -3'
miRNA:   3'- gACuuCGCGGCGCgaCUaCCGgUGUG- -5'
11411 3' -58.1 NC_003085.1 + 37848 0.72 0.213356
Target:  5'- cCUGGuAGCGCUgccuGCGCUGGccGGCCAgACg -3'
miRNA:   3'- -GACU-UCGCGG----CGCGACUa-CCGGUgUG- -5'
11411 3' -58.1 NC_003085.1 + 35398 0.7 0.305148
Target:  5'- -cGAGGCGCU-CGCaGAUGGCCucgacggACACg -3'
miRNA:   3'- gaCUUCGCGGcGCGaCUACCGG-------UGUG- -5'
11411 3' -58.1 NC_003085.1 + 35172 0.75 0.126947
Target:  5'- aCUGAGggcuGCGCgGCGCuUGAcggcagcagccUGGCCGCACg -3'
miRNA:   3'- -GACUU----CGCGgCGCG-ACU-----------ACCGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.