Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11411 | 3' | -58.1 | NC_003085.1 | + | 13098 | 0.68 | 0.389095 |
Target: 5'- aCUGGcaCGCCGCGCUGA-GGUgcgugaGCGCg -3' miRNA: 3'- -GACUucGCGGCGCGACUaCCGg-----UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 24125 | 0.68 | 0.385496 |
Target: 5'- -gGAAGCG-CGCGCcauccaccuugucGGUGGCCACcACg -3' miRNA: 3'- gaCUUCGCgGCGCGa------------CUACCGGUG-UG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 8936 | 0.68 | 0.383704 |
Target: 5'- -cGAAGUGCagcgcguggccaaccUGCGCUGGgccaagGGCCGCGg -3' miRNA: 3'- gaCUUCGCG---------------GCGCGACUa-----CCGGUGUg -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 5564 | 0.68 | 0.380138 |
Target: 5'- ---uGGCGCCGCGaacGGUGcGCCACGu -3' miRNA: 3'- gacuUCGCGGCGCga-CUAC-CGGUGUg -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 563 | 0.68 | 0.380138 |
Target: 5'- -cGAGGCGgCGCgGCUGGcgGGCCAaUGCu -3' miRNA: 3'- gaCUUCGCgGCG-CGACUa-CCGGU-GUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 14682 | 0.69 | 0.345711 |
Target: 5'- -gGAGGCGCCgugGCGCUGGacgaaGGCCAa-- -3' miRNA: 3'- gaCUUCGCGG---CGCGACUa----CCGGUgug -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 5664 | 0.69 | 0.337461 |
Target: 5'- --cGAGCGCCGCGgaGAgauuccGGCCAUuCg -3' miRNA: 3'- gacUUCGCGGCGCgaCUa-----CCGGUGuG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 6933 | 0.69 | 0.329356 |
Target: 5'- -cGAGGCGaaGCGg-GA-GGCCACGCa -3' miRNA: 3'- gaCUUCGCggCGCgaCUaCCGGUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 8218 | 0.69 | 0.329356 |
Target: 5'- cCUGccGCGCgugGCGUUGuagaGGCCGCACg -3' miRNA: 3'- -GACuuCGCGg--CGCGACua--CCGGUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 5302 | 0.69 | 0.329356 |
Target: 5'- -cGAAGuCGCCucccuccgcgaGCGC--GUGGCCACGCu -3' miRNA: 3'- gaCUUC-GCGG-----------CGCGacUACCGGUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 19221 | 0.69 | 0.321395 |
Target: 5'- gCUG-GGCGCCGCGCaa--GGCCuGCGCc -3' miRNA: 3'- -GACuUCGCGGCGCGacuaCCGG-UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 38131 | 0.69 | 0.321395 |
Target: 5'- gUGAGGCucGCCgcccugcugGCGUUGGUGGUgGCGCu -3' miRNA: 3'- gACUUCG--CGG---------CGCGACUACCGgUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 35398 | 0.7 | 0.305148 |
Target: 5'- -cGAGGCGCU-CGCaGAUGGCCucgacggACACg -3' miRNA: 3'- gaCUUCGCGGcGCGaCUACCGG-------UGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 32813 | 0.7 | 0.269023 |
Target: 5'- gUGAAGCagcggcuGUCGCGaCUGAUuggggcccgagaGGCCGCGCg -3' miRNA: 3'- gACUUCG-------CGGCGC-GACUA------------CCGGUGUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 4109 | 0.71 | 0.256228 |
Target: 5'- gCUGGaguugGGCGCCGCGCUGGgacuccaGcGCCGCu- -3' miRNA: 3'- -GACU-----UCGCGGCGCGACUa------C-CGGUGug -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 22528 | 0.71 | 0.254911 |
Target: 5'- -cGAAGCGCCGCGCguacaugcaGGCCA-ACg -3' miRNA: 3'- gaCUUCGCGGCGCGacua-----CCGGUgUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 25133 | 0.71 | 0.243302 |
Target: 5'- --aGAGCGCCGCGgaGAugucguUGGCCAUg- -3' miRNA: 3'- gacUUCGCGGCGCgaCU------ACCGGUGug -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 11886 | 0.71 | 0.243302 |
Target: 5'- cCUGAGcGCGCCGaGUUcAUGGCCAgGCg -3' miRNA: 3'- -GACUU-CGCGGCgCGAcUACCGGUgUG- -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 34684 | 0.71 | 0.239532 |
Target: 5'- gCUGAcuuucgaugucaacaGGCGCCG-GUUGcAUGGCCACGg -3' miRNA: 3'- -GACU---------------UCGCGGCgCGAC-UACCGGUGUg -5' |
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11411 | 3' | -58.1 | NC_003085.1 | + | 48972 | 0.71 | 0.230924 |
Target: 5'- ----cGCGCCuucaucuccGCGCUGAUGGCCgucguGCGCu -3' miRNA: 3'- gacuuCGCGG---------CGCGACUACCGG-----UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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