miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11413 5' -55.4 NC_003085.1 + 24047 0.66 0.645206
Target:  5'- aUCCUCGcccgccUGGCGaagCGCGGGAaGCCGc -3'
miRNA:   3'- -AGGAGUu-----ACUGCga-GCGCUCUgCGGU- -5'
11413 5' -55.4 NC_003085.1 + 25446 0.73 0.302981
Target:  5'- gUUCUUggUGACGUugUCgGCGAuGACGCCAc -3'
miRNA:   3'- -AGGAGuuACUGCG--AG-CGCU-CUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 26552 0.67 0.600906
Target:  5'- aCCg----GAgGCUCG-GAGACGCCGa -3'
miRNA:   3'- aGGaguuaCUgCGAGCgCUCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 27448 0.66 0.678337
Target:  5'- cCUUCGAaaugGGCGCgcaguuucgUGCGGGAgGCCAc -3'
miRNA:   3'- aGGAGUUa---CUGCGa--------GCGCUCUgCGGU- -5'
11413 5' -55.4 NC_003085.1 + 28519 0.7 0.432884
Target:  5'- aCCUCGugccaGACGCgCGCGGGGCuCCAu -3'
miRNA:   3'- aGGAGUua---CUGCGaGCGCUCUGcGGU- -5'
11413 5' -55.4 NC_003085.1 + 30335 0.75 0.222307
Target:  5'- cCCUgGcgGACGCugUCGCGGGGCGCa- -3'
miRNA:   3'- aGGAgUuaCUGCG--AGCGCUCUGCGgu -5'
11413 5' -55.4 NC_003085.1 + 30785 0.66 0.689307
Target:  5'- aCCUCGAccgGAagaGC-CGUGAGcGCGCCGc -3'
miRNA:   3'- aGGAGUUa--CUg--CGaGCGCUC-UGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 32420 0.66 0.689307
Target:  5'- cCCUCGAagcuccggagguUGGCGUcauaCGCGAGcaGCGCCc -3'
miRNA:   3'- aGGAGUU------------ACUGCGa---GCGCUC--UGCGGu -5'
11413 5' -55.4 NC_003085.1 + 33023 0.66 0.671734
Target:  5'- gCCUCgAAUGACGUcggCGCcuggauauggggccaGAGACGCUu -3'
miRNA:   3'- aGGAG-UUACUGCGa--GCG---------------CUCUGCGGu -5'
11413 5' -55.4 NC_003085.1 + 34652 0.68 0.524735
Target:  5'- cUCCgCGAUGGC-CUCGCGgaGGAUGUCGg -3'
miRNA:   3'- -AGGaGUUACUGcGAGCGC--UCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 36727 0.67 0.589875
Target:  5'- cCCUCA--GACGCUCGgGGuauGCGCUAc -3'
miRNA:   3'- aGGAGUuaCUGCGAGCgCUc--UGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 40638 0.66 0.667324
Target:  5'- gUCCUCGucgcccUGACGCUgGCu--GCGCCGc -3'
miRNA:   3'- -AGGAGUu-----ACUGCGAgCGcucUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 40906 0.66 0.667324
Target:  5'- aCCUCAagaccugcGUGACgaGCUCGCcgcGCGCCGa -3'
miRNA:   3'- aGGAGU--------UACUG--CGAGCGcucUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 41948 0.69 0.493175
Target:  5'- gUCCUCGucgGUGAuguccugcaacCGCUCGaCGcGGACGCCc -3'
miRNA:   3'- -AGGAGU---UACU-----------GCGAGC-GC-UCUGCGGu -5'
11413 5' -55.4 NC_003085.1 + 43407 0.66 0.70022
Target:  5'- aUCC-CGGUGGgGCUCGgGAGAaucagGUCAu -3'
miRNA:   3'- -AGGaGUUACUgCGAGCgCUCUg----CGGU- -5'
11413 5' -55.4 NC_003085.1 + 45029 0.66 0.667324
Target:  5'- cUCgUCAggGAUGCUCuGCcAGuCGCCAg -3'
miRNA:   3'- -AGgAGUuaCUGCGAG-CGcUCuGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 45944 1.09 0.000845
Target:  5'- cUCCUCAAUGACGCUCGCGAGACGCCAg -3'
miRNA:   3'- -AGGAGUUACUGCGAGCGCUCUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 46519 0.66 0.678337
Target:  5'- aCCUCuuUGGC-CUCGUGcucGACGUCAc -3'
miRNA:   3'- aGGAGuuACUGcGAGCGCu--CUGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 47683 0.67 0.634124
Target:  5'- aCUUCGGcggucUGACGCUCagauGCGAGuCGUCGa -3'
miRNA:   3'- aGGAGUU-----ACUGCGAG----CGCUCuGCGGU- -5'
11413 5' -55.4 NC_003085.1 + 47857 0.68 0.557033
Target:  5'- aUCCggGGUGAgGUcgaGCGAGACGUCAg -3'
miRNA:   3'- -AGGagUUACUgCGag-CGCUCUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.