miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11414 3' -60.5 NC_003085.1 + 27845 0.7 0.223011
Target:  5'- aUGGcCGUCUCGCGcGGguCGcUCGCGCc -3'
miRNA:   3'- -ACU-GCGGAGCGCaCCguGC-AGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 27909 0.68 0.323299
Target:  5'- aUGGC-CCUCGCG-GGC-CG-CGCGUg -3'
miRNA:   3'- -ACUGcGGAGCGCaCCGuGCaGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 28605 0.66 0.406976
Target:  5'- -cACGCCggugGUGUGGCGC-UCGCuGCUg -3'
miRNA:   3'- acUGCGGag--CGCACCGUGcAGCG-CGA- -5'
11414 3' -60.5 NC_003085.1 + 29256 0.68 0.308182
Target:  5'- aGGCGUCcgCGuCGUGGCugGcccagUCGUGCa -3'
miRNA:   3'- aCUGCGGa-GC-GCACCGugC-----AGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 29732 0.7 0.234084
Target:  5'- cGGCGUCgUCGCccaggacGUGGCcgcCGUCGCGCc -3'
miRNA:   3'- aCUGCGG-AGCG-------CACCGu--GCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 34703 0.66 0.425268
Target:  5'- aGGCGCCggUUGCaUGGcCACGgcggCGCGUg -3'
miRNA:   3'- aCUGCGG--AGCGcACC-GUGCa---GCGCGa -5'
11414 3' -60.5 NC_003085.1 + 35410 0.66 0.406976
Target:  5'- aGAUgGCCUCGaCGgacacGC-CGUCGCGCa -3'
miRNA:   3'- aCUG-CGGAGC-GCac---CGuGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 37183 0.71 0.19599
Target:  5'- -cGCGCCgUCGCGUGcgaguuccauGCACcgGUCGCGCa -3'
miRNA:   3'- acUGCGG-AGCGCAC----------CGUG--CAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 38417 0.73 0.138776
Target:  5'- cGAUGgUUCGCGUuuucGGCAccauCGUCGCGCUg -3'
miRNA:   3'- aCUGCgGAGCGCA----CCGU----GCAGCGCGA- -5'
11414 3' -60.5 NC_003085.1 + 38717 0.72 0.171873
Target:  5'- cGGCGCC-CGUGUGGCcggacagcaacaGCGUC-CGCUu -3'
miRNA:   3'- aCUGCGGaGCGCACCG------------UGCAGcGCGA- -5'
11414 3' -60.5 NC_003085.1 + 38765 0.7 0.223011
Target:  5'- --gUGCCUCGCG-GGC-CG-CGCGCa -3'
miRNA:   3'- acuGCGGAGCGCaCCGuGCaGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 39258 0.7 0.217365
Target:  5'- cUGGCgGCCUcccgCGgGUGaGCAgGUCGCGCa -3'
miRNA:   3'- -ACUG-CGGA----GCgCAC-CGUgCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 39915 0.66 0.389185
Target:  5'- aGAaGCCa-GCGUcGGcCGCGUCGUGCa -3'
miRNA:   3'- aCUgCGGagCGCA-CC-GUGCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 40764 0.69 0.266095
Target:  5'- uUGG-GCCUCGUGUGGCugACGUUG-GCg -3'
miRNA:   3'- -ACUgCGGAGCGCACCG--UGCAGCgCGa -5'
11414 3' -60.5 NC_003085.1 + 40987 0.66 0.434596
Target:  5'- -aGCGCCUCgGCGgccuucUGGCGCGUCaUGUa -3'
miRNA:   3'- acUGCGGAG-CGC------ACCGUGCAGcGCGa -5'
11414 3' -60.5 NC_003085.1 + 44135 0.68 0.331062
Target:  5'- cUGAcuuCGCCUCcaGCGUGGCcacGCGcUCGCGg- -3'
miRNA:   3'- -ACU---GCGGAG--CGCACCG---UGC-AGCGCga -5'
11414 3' -60.5 NC_003085.1 + 45082 0.69 0.28583
Target:  5'- --cCGCCguccacaacuccuUCGCGUGGUccAgGUCGCGCg -3'
miRNA:   3'- acuGCGG-------------AGCGCACCG--UgCAGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 45749 1.07 0.00036
Target:  5'- cUGACGCCUCGCGUGGCACGUCGCGCUg -3'
miRNA:   3'- -ACUGCGGAGCGCACCGUGCAGCGCGA- -5'
11414 3' -60.5 NC_003085.1 + 45882 0.68 0.323299
Target:  5'- cGcCGCCUCggcaGCGaGGCGCGcUUGCGCc -3'
miRNA:   3'- aCuGCGGAG----CGCaCCGUGC-AGCGCGa -5'
11414 3' -60.5 NC_003085.1 + 47368 0.7 0.246855
Target:  5'- aUGGCGCCgaggUGCGgcGGCugcgcuCGUCGCGUc -3'
miRNA:   3'- -ACUGCGGa---GCGCa-CCGu-----GCAGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.