Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11414 | 3' | -60.5 | NC_003085.1 | + | 16995 | 0.68 | 0.324069 |
Target: 5'- cGACGCCgacggcgacgagaagCGCGgaugGGCGCugcUCGCGUa -3' miRNA: 3'- aCUGCGGa--------------GCGCa---CCGUGc--AGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 833 | 0.68 | 0.331062 |
Target: 5'- aGGuCGUCgagCGCGUcucuCACGUCGCGCUg -3' miRNA: 3'- aCU-GCGGa--GCGCAcc--GUGCAGCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 29256 | 0.68 | 0.308182 |
Target: 5'- aGGCGUCcgCGuCGUGGCugGcccagUCGUGCa -3' miRNA: 3'- aCUGCGGa-GC-GCACCGugC-----AGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 47368 | 0.7 | 0.246855 |
Target: 5'- aUGGCGCCgaggUGCGgcGGCugcgcuCGUCGCGUc -3' miRNA: 3'- -ACUGCGGa---GCGCa-CCGu-----GCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 38765 | 0.7 | 0.223011 |
Target: 5'- --gUGCCUCGCG-GGC-CG-CGCGCa -3' miRNA: 3'- acuGCGGAGCGCaCCGuGCaGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 27845 | 0.7 | 0.223011 |
Target: 5'- aUGGcCGUCUCGCGcGGguCGcUCGCGCc -3' miRNA: 3'- -ACU-GCGGAGCGCaCCguGC-AGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 39258 | 0.7 | 0.217365 |
Target: 5'- cUGGCgGCCUcccgCGgGUGaGCAgGUCGCGCa -3' miRNA: 3'- -ACUG-CGGA----GCgCAC-CGUgCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 14908 | 0.71 | 0.206438 |
Target: 5'- cGGCGCa-CGCGggccGGCugGUgGCGCUc -3' miRNA: 3'- aCUGCGgaGCGCa---CCGugCAgCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 37183 | 0.71 | 0.19599 |
Target: 5'- -cGCGCCgUCGCGUGcgaguuccauGCACcgGUCGCGCa -3' miRNA: 3'- acUGCGG-AGCGCAC----------CGUG--CAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 38717 | 0.72 | 0.171873 |
Target: 5'- cGGCGCC-CGUGUGGCcggacagcaacaGCGUC-CGCUu -3' miRNA: 3'- aCUGCGGaGCGCACCG------------UGCAGcGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 45882 | 0.68 | 0.323299 |
Target: 5'- cGcCGCCUCggcaGCGaGGCGCGcUUGCGCc -3' miRNA: 3'- aCuGCGGAG----CGCaCCGUGC-AGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 25799 | 0.68 | 0.328718 |
Target: 5'- gGACGCCUgggcggcguucgccUGCGcGGCcUGcUCGCGCUg -3' miRNA: 3'- aCUGCGGA--------------GCGCaCCGuGC-AGCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 40987 | 0.66 | 0.434596 |
Target: 5'- -aGCGCCUCgGCGgccuucUGGCGCGUCaUGUa -3' miRNA: 3'- acUGCGGAG-CGC------ACCGUGCAGcGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 20972 | 0.66 | 0.434596 |
Target: 5'- aUGGCGCg-CGCGUuGCGCGUCagcaCGCa -3' miRNA: 3'- -ACUGCGgaGCGCAcCGUGCAGc---GCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 16380 | 0.66 | 0.434596 |
Target: 5'- gUGA-GCCUcCGCG-GGCACGUCcugGCGa- -3' miRNA: 3'- -ACUgCGGA-GCGCaCCGUGCAG---CGCga -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 35410 | 0.66 | 0.406976 |
Target: 5'- aGAUgGCCUCGaCGgacacGC-CGUCGCGCa -3' miRNA: 3'- aCUG-CGGAGC-GCac---CGuGCAGCGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 20048 | 0.66 | 0.389185 |
Target: 5'- cUGA-GCCUcCGCcaugGGCugGcCGCGCUg -3' miRNA: 3'- -ACUgCGGA-GCGca--CCGugCaGCGCGA- -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 9983 | 0.67 | 0.380482 |
Target: 5'- -aGCGCCUCGaCGc-GCACGUCG-GCa -3' miRNA: 3'- acUGCGGAGC-GCacCGUGCAGCgCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 26698 | 0.67 | 0.355167 |
Target: 5'- cGuCGCCacCGCGgcgGGCGuCGUCgGCGCg -3' miRNA: 3'- aCuGCGGa-GCGCa--CCGU-GCAG-CGCGa -5' |
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11414 | 3' | -60.5 | NC_003085.1 | + | 22058 | 0.67 | 0.346996 |
Target: 5'- -uGCGCC-CGCG-GGCAgGUaccaCGCGCg -3' miRNA: 3'- acUGCGGaGCGCaCCGUgCA----GCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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