Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11414 | 5' | -51.1 | NC_003085.1 | + | 614 | 0.66 | 0.876166 |
Target: 5'- cCGUCCUgGGCGC-GCUCGAGGcUGGCg -3' miRNA: 3'- cGUAGGG-UUGCGuUGAGCUCCaGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 3093 | 0.73 | 0.494517 |
Target: 5'- cGC-UCCCGcggaagGCGCGGCUUGAGG-CGAUg -3' miRNA: 3'- -CGuAGGGU------UGCGUUGAGCUCCaGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 3701 | 0.67 | 0.850856 |
Target: 5'- uGCggCCacgCAGCGCGACgugccacgCGAGGcgUCAGCa -3' miRNA: 3'- -CGuaGG---GUUGCGUUGa-------GCUCC--AGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 6935 | 0.79 | 0.229178 |
Target: 5'- cGCAUCCCGG-GCGGCUgGGcGGUCGACu -3' miRNA: 3'- -CGUAGGGUUgCGUUGAgCU-CCAGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 7269 | 0.66 | 0.899033 |
Target: 5'- uGUcgCCCAGCGCcucauGC-CGAGGcuggcugCGACg -3' miRNA: 3'- -CGuaGGGUUGCGu----UGaGCUCCa------GUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 8009 | 0.66 | 0.883291 |
Target: 5'- cGCGcCCCAgccuugcGCGcCAACUCGAcGGagAGCg -3' miRNA: 3'- -CGUaGGGU-------UGC-GUUGAGCU-CCagUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 9444 | 0.67 | 0.841913 |
Target: 5'- aCGUgCCGGCGCucauggacgAGCUCGAGGcCGGg -3' miRNA: 3'- cGUAgGGUUGCG---------UUGAGCUCCaGUUg -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 10022 | 0.66 | 0.867991 |
Target: 5'- uGCcgCCCGaguccuuuGCGCcAUgCGAGGUCGAg -3' miRNA: 3'- -CGuaGGGU--------UGCGuUGaGCUCCAGUUg -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 10848 | 0.66 | 0.891693 |
Target: 5'- aGCGUCCCGACG-AGCaCGGcGGUgcaugCAACa -3' miRNA: 3'- -CGUAGGGUUGCgUUGaGCU-CCA-----GUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 14077 | 0.7 | 0.674311 |
Target: 5'- cGCAgagCCCGAUGUgaacgaacucAACUgGAGGUCcACg -3' miRNA: 3'- -CGUa--GGGUUGCG----------UUGAgCUCCAGuUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 15568 | 0.66 | 0.867991 |
Target: 5'- cGCGUCaCUggUGCGAUUUcagGAGGUCGc- -3' miRNA: 3'- -CGUAG-GGuuGCGUUGAG---CUCCAGUug -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 16443 | 0.66 | 0.867991 |
Target: 5'- gGCG--CCGACGUcAUUCGAGG-CGACg -3' miRNA: 3'- -CGUagGGUUGCGuUGAGCUCCaGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 17931 | 0.67 | 0.850856 |
Target: 5'- uGCG-CCCAGCGCGgcGCUCuGGGcUCuGCu -3' miRNA: 3'- -CGUaGGGUUGCGU--UGAGcUCC-AGuUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 18336 | 0.71 | 0.617238 |
Target: 5'- cGCAcgaaCUCGGCGCGcuGCUCGGGGUUGAg -3' miRNA: 3'- -CGUa---GGGUUGCGU--UGAGCUCCAGUUg -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 19546 | 0.67 | 0.839183 |
Target: 5'- cGCG-CCCGACGCGGagaaccuggagaacCUCccGGUCGGCu -3' miRNA: 3'- -CGUaGGGUUGCGUU--------------GAGcuCCAGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 20668 | 0.67 | 0.850856 |
Target: 5'- gGCAcUCCUcgcgcCGCAACUCGugcacaacgAGGUCAAUu -3' miRNA: 3'- -CGU-AGGGuu---GCGUUGAGC---------UCCAGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 21155 | 0.66 | 0.867991 |
Target: 5'- cCGUCCCAccGCGCAccuGCUgCGAGGcCugguACu -3' miRNA: 3'- cGUAGGGU--UGCGU---UGA-GCUCCaGu---UG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 23458 | 0.79 | 0.229178 |
Target: 5'- cGCAUgacggaggCCCAGCGCAGCgUCGAGGcauucgUCAGCa -3' miRNA: 3'- -CGUA--------GGGUUGCGUUG-AGCUCC------AGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 26697 | 0.66 | 0.891693 |
Target: 5'- cCGUCgCCAcCGCGGCgggCGucGUCGGCg -3' miRNA: 3'- cGUAG-GGUuGCGUUGa--GCucCAGUUG- -5' |
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11414 | 5' | -51.1 | NC_003085.1 | + | 30837 | 0.71 | 0.640102 |
Target: 5'- gGCAaCCCAGCaGCAACUCGA---CAACg -3' miRNA: 3'- -CGUaGGGUUG-CGUUGAGCUccaGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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