miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11414 5' -51.1 NC_003085.1 + 43202 0.68 0.773254
Target:  5'- cGCAUCCCAcgGCGGCgUCGuguaGGcGUCGACc -3'
miRNA:   3'- -CGUAGGGUugCGUUG-AGC----UC-CAGUUG- -5'
11414 5' -51.1 NC_003085.1 + 20668 0.67 0.850856
Target:  5'- gGCAcUCCUcgcgcCGCAACUCGugcacaacgAGGUCAAUu -3'
miRNA:   3'- -CGU-AGGGuu---GCGUUGAGC---------UCCAGUUG- -5'
11414 5' -51.1 NC_003085.1 + 32453 0.67 0.859552
Target:  5'- aGCAgcgCCCAuccGCGCuuCUCGucgccGUCGGCg -3'
miRNA:   3'- -CGUa--GGGU---UGCGuuGAGCuc---CAGUUG- -5'
11414 5' -51.1 NC_003085.1 + 21155 0.66 0.867991
Target:  5'- cCGUCCCAccGCGCAccuGCUgCGAGGcCugguACu -3'
miRNA:   3'- cGUAGGGU--UGCGU---UGA-GCUCCaGu---UG- -5'
11414 5' -51.1 NC_003085.1 + 36811 0.66 0.867991
Target:  5'- uCGUCCCGcACGCucuucagCGAGG-CAGCg -3'
miRNA:   3'- cGUAGGGU-UGCGuuga---GCUCCaGUUG- -5'
11414 5' -51.1 NC_003085.1 + 8009 0.66 0.883291
Target:  5'- cGCGcCCCAgccuugcGCGcCAACUCGAcGGagAGCg -3'
miRNA:   3'- -CGUaGGGU-------UGC-GUUGAGCU-CCagUUG- -5'
11414 5' -51.1 NC_003085.1 + 10848 0.66 0.891693
Target:  5'- aGCGUCCCGACG-AGCaCGGcGGUgcaugCAACa -3'
miRNA:   3'- -CGUAGGGUUGCgUUGaGCU-CCA-----GUUG- -5'
11414 5' -51.1 NC_003085.1 + 26697 0.66 0.891693
Target:  5'- cCGUCgCCAcCGCGGCgggCGucGUCGGCg -3'
miRNA:   3'- cGUAG-GGUuGCGUUGa--GCucCAGUUG- -5'
11414 5' -51.1 NC_003085.1 + 7269 0.66 0.899033
Target:  5'- uGUcgCCCAGCGCcucauGC-CGAGGcuggcugCGACg -3'
miRNA:   3'- -CGuaGGGUUGCGu----UGaGCUCCa------GUUG- -5'
11414 5' -51.1 NC_003085.1 + 32406 0.66 0.899033
Target:  5'- cGUAcuUCUCGACGCccucgaAGCUCcgGAGGUUGGCg -3'
miRNA:   3'- -CGU--AGGGUUGCG------UUGAG--CUCCAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.