miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11418 5' -56.5 NC_003085.1 + 1306 0.66 0.650267
Target:  5'- cUCCCGcGUGGCCGcGAAgg-CUggcaCUGCGa -3'
miRNA:   3'- -AGGGCuUACCGGC-CUUagaGA----GGCGC- -5'
11418 5' -56.5 NC_003085.1 + 34499 0.66 0.650267
Target:  5'- cUCCCGGAggugGGCCGccagCgCUUCGCGc -3'
miRNA:   3'- -AGGGCUUa---CCGGCcuuaGaGAGGCGC- -5'
11418 5' -56.5 NC_003085.1 + 35220 0.66 0.617491
Target:  5'- gCCCGGAcucuccgaUGGCCGGuugAGUCUggCUGCa -3'
miRNA:   3'- aGGGCUU--------ACCGGCC---UUAGAgaGGCGc -5'
11418 5' -56.5 NC_003085.1 + 8776 0.66 0.617491
Target:  5'- aCCCGGAcgucgucccccUGcGCCGGcgg--CUCCGCGa -3'
miRNA:   3'- aGGGCUU-----------AC-CGGCCuuagaGAGGCGC- -5'
11418 5' -56.5 NC_003085.1 + 41674 0.66 0.606577
Target:  5'- cCCUGuugGGCCGcGAAUgcgCUCgCCGCGa -3'
miRNA:   3'- aGGGCuuaCCGGC-CUUA---GAGaGGCGC- -5'
11418 5' -56.5 NC_003085.1 + 9586 0.67 0.552509
Target:  5'- -gCCGAGca-CCGGcGUCUCUCCGCc -3'
miRNA:   3'- agGGCUUaccGGCCuUAGAGAGGCGc -5'
11418 5' -56.5 NC_003085.1 + 38721 0.67 0.552509
Target:  5'- gCCCGuGUGGCCGGAcagCaacagCgUCCGCu -3'
miRNA:   3'- aGGGCuUACCGGCCUua-Ga----G-AGGCGc -5'
11418 5' -56.5 NC_003085.1 + 15040 0.68 0.508243
Target:  5'- cUCCGAGuuuuggcUGGCCGGAAUCcCcaugccgUCCGCc -3'
miRNA:   3'- aGGGCUU-------ACCGGCCUUAGaG-------AGGCGc -5'
11418 5' -56.5 NC_003085.1 + 31726 0.69 0.460586
Target:  5'- cUCCCGAA-GGCgGGAcuggucacgcgccucUCUCUCUGCc -3'
miRNA:   3'- -AGGGCUUaCCGgCCUu--------------AGAGAGGCGc -5'
11418 5' -56.5 NC_003085.1 + 7563 0.69 0.440066
Target:  5'- gCCCGAgaAUGcGCUGGAGUCg--CUGCGu -3'
miRNA:   3'- aGGGCU--UAC-CGGCCUUAGagaGGCGC- -5'
11418 5' -56.5 NC_003085.1 + 46757 0.72 0.301202
Target:  5'- gCCCGAAguccucGCCGGAGUCcaccaccuccgcCUCCGCGa -3'
miRNA:   3'- aGGGCUUac----CGGCCUUAGa-----------GAGGCGC- -5'
11418 5' -56.5 NC_003085.1 + 40027 0.76 0.180464
Target:  5'- uUCCCGuAcgGGCCGGAcuacGUCgacCUCUGCGu -3'
miRNA:   3'- -AGGGC-UuaCCGGCCU----UAGa--GAGGCGC- -5'
11418 5' -56.5 NC_003085.1 + 43790 1.1 0.000606
Target:  5'- aUCCCGAAUGGCCGGAAUCUCUCCGCGg -3'
miRNA:   3'- -AGGGCUUACCGGCCUUAGAGAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.