Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11419 | 5' | -61.5 | NC_003085.1 | + | 16896 | 0.69 | 0.275616 |
Target: 5'- gCCGaGCgaugagccaCCUCG-CACCCCaGCCCCc -3' miRNA: 3'- gGGCaUGa--------GGAGCgGUGGGGaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 6458 | 0.69 | 0.26252 |
Target: 5'- aCCCGUACUCCUgggcuccuucuaCGCCAaUCC-GCgCCa -3' miRNA: 3'- -GGGCAUGAGGA------------GCGGUgGGGaCGgGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 6173 | 0.69 | 0.275616 |
Target: 5'- aCCUGUGCUCCaUGCCcagcacggacacACUCCUGCgCg -3' miRNA: 3'- -GGGCAUGAGGaGCGG------------UGGGGACGgGg -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 11786 | 0.69 | 0.261878 |
Target: 5'- gCCGcGCUCCgggcgugUCgGCUGCCCCaucgccgggUGCCCCg -3' miRNA: 3'- gGGCaUGAGG-------AG-CGGUGGGG---------ACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 46757 | 0.69 | 0.249934 |
Target: 5'- gCCCGaAgUCCUCGCCggaguccaccACCUCcGCCuCCg -3' miRNA: 3'- -GGGCaUgAGGAGCGG----------UGGGGaCGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 6030 | 0.68 | 0.313572 |
Target: 5'- gCCCGgACgCCgCGCCAggaugaccugauucuCCCgaGCCCCa -3' miRNA: 3'- -GGGCaUGaGGaGCGGU---------------GGGgaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 40402 | 0.68 | 0.321021 |
Target: 5'- gCCGgcauccaACUCCUCaCCACCuucggaggcgcgcugCCUGCCgCCg -3' miRNA: 3'- gGGCa------UGAGGAGcGGUGG---------------GGACGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 12983 | 0.68 | 0.295525 |
Target: 5'- cUCCGUGC-CCUgGCUACCuccaacaCCUaCCCCg -3' miRNA: 3'- -GGGCAUGaGGAgCGGUGG-------GGAcGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 43960 | 0.68 | 0.289229 |
Target: 5'- -aCGUGCUcCCUCaCgGCCCg-GCCCCa -3' miRNA: 3'- ggGCAUGA-GGAGcGgUGGGgaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 3190 | 0.68 | 0.303365 |
Target: 5'- gCCGUcCU-CUCGCgGgCCCUGgCCCg -3' miRNA: 3'- gGGCAuGAgGAGCGgUgGGGACgGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 14143 | 0.68 | 0.309897 |
Target: 5'- gUCGUAUUCCUCaccgacaGCCGCCgcgaCCUGCUgCCg -3' miRNA: 3'- gGGCAUGAGGAG-------CGGUGG----GGACGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 42345 | 0.68 | 0.303365 |
Target: 5'- uCCUGgACuUCCuUCGCCGCCCgcucgcgcaUGCCCUc -3' miRNA: 3'- -GGGCaUG-AGG-AGCGGUGGGg--------ACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 31467 | 0.67 | 0.365159 |
Target: 5'- gUCCGcGCU-CUCGCaGCUCCgUGCCCUg -3' miRNA: 3'- -GGGCaUGAgGAGCGgUGGGG-ACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 17557 | 0.67 | 0.348925 |
Target: 5'- uCCCGUG--CCUCGuCCGCCUC-GUUCCg -3' miRNA: 3'- -GGGCAUgaGGAGC-GGUGGGGaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 35108 | 0.67 | 0.328602 |
Target: 5'- cCCCGUugaguggcagguccgGCcCCUCGUCuuCUCCUGCCUUc -3' miRNA: 3'- -GGGCA---------------UGaGGAGCGGu-GGGGACGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 45771 | 0.67 | 0.341004 |
Target: 5'- aCCGgacgcgGCgucaggaCUCGCCGCgccguCCCUGCCuCCa -3' miRNA: 3'- gGGCa-----UGag-----GAGCGGUG-----GGGACGG-GG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 12855 | 0.67 | 0.325554 |
Target: 5'- gCCaCGcaaguUGC-CCUucCGCCACCCgUGCCCg -3' miRNA: 3'- -GG-GC-----AUGaGGA--GCGGUGGGgACGGGg -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 23698 | 0.67 | 0.341004 |
Target: 5'- gCCCGcgcagcagcCUCCUcCGUCaagacgGCCCCgGCCCCc -3' miRNA: 3'- -GGGCau-------GAGGA-GCGG------UGGGGaCGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 16610 | 0.66 | 0.40797 |
Target: 5'- uCCCGgGCggucCCgcggcgCGCgGCCUCUcggGCCCCa -3' miRNA: 3'- -GGGCaUGa---GGa-----GCGgUGGGGA---CGGGG- -5' |
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11419 | 5' | -61.5 | NC_003085.1 | + | 17316 | 0.66 | 0.40797 |
Target: 5'- gCCGUAacccaCCgCGCCACCagCC-GCCCCc -3' miRNA: 3'- gGGCAUga---GGaGCGGUGG--GGaCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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