miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 18937 0.82 0.030459
Target:  5'- gCUGUGCUCCacgCGCCGCCuCCUGUCCUg -3'
miRNA:   3'- gGGCAUGAGGa--GCGGUGG-GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 20231 0.66 0.373469
Target:  5'- uCCgGUACg--UCGCCACCUUcGCCCa -3'
miRNA:   3'- -GGgCAUGaggAGCGGUGGGGaCGGGg -5'
11419 5' -61.5 NC_003085.1 + 23698 0.67 0.341004
Target:  5'- gCCCGcgcagcagcCUCCUcCGUCaagacgGCCCCgGCCCCc -3'
miRNA:   3'- -GGGCau-------GAGGA-GCGG------UGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 24144 0.66 0.416901
Target:  5'- gCUgGUACUCCggcuaugacgUGCUACCgaCgGCCCCa -3'
miRNA:   3'- -GGgCAUGAGGa---------GCGGUGGg-GaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 24510 0.66 0.373469
Target:  5'- gCCGUACUCCgUCGUCugguagGCCaugugCCUGUCuCCg -3'
miRNA:   3'- gGGCAUGAGG-AGCGG------UGG-----GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 26757 0.66 0.402668
Target:  5'- aCCGgcgGCcCUUCGCCACCaaccggaugcuggaCUGCgCCa -3'
miRNA:   3'- gGGCa--UGaGGAGCGGUGGg-------------GACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 26972 0.66 0.399159
Target:  5'- gUCgGUGCcgUCCgUCGCCA-CCgUGCCCUc -3'
miRNA:   3'- -GGgCAUG--AGG-AGCGGUgGGgACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 27807 0.66 0.373469
Target:  5'- gCCGgaUGCUgccgaaCUUCGCCuucacCCCCUGCgCCa -3'
miRNA:   3'- gGGC--AUGA------GGAGCGGu----GGGGACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 28312 0.73 0.13482
Target:  5'- uCCaCGUACcaguccaccuUCCg-GCCGCCCUUGUCCCa -3'
miRNA:   3'- -GG-GCAUG----------AGGagCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 29786 0.78 0.061254
Target:  5'- cCCUGgcggcaUGCUUCUCGuCCACCCCauuuuUGCCCCg -3'
miRNA:   3'- -GGGC------AUGAGGAGC-GGUGGGG-----ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 29861 0.66 0.373469
Target:  5'- aCCC--ACUCCgCGuCCuuCCCUGCCaCCu -3'
miRNA:   3'- -GGGcaUGAGGaGC-GGugGGGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 31467 0.67 0.365159
Target:  5'- gUCCGcGCU-CUCGCaGCUCCgUGCCCUg -3'
miRNA:   3'- -GGGCaUGAgGAGCGgUGGGG-ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 32351 0.69 0.269003
Target:  5'- uCCUGguagGCgUCCUUGCCGuggUCCCUGCCg- -3'
miRNA:   3'- -GGGCa---UG-AGGAGCGGU---GGGGACGGgg -5'
11419 5' -61.5 NC_003085.1 + 32404 0.74 0.111796
Target:  5'- gCCGUACUUCUCGaCGCCCUcgaaGCUCCg -3'
miRNA:   3'- gGGCAUGAGGAGCgGUGGGGa---CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 34138 0.66 0.390471
Target:  5'- gCCCGU-CUCa-CGCCcuACCUCUaugggcucgacGCCCCg -3'
miRNA:   3'- -GGGCAuGAGgaGCGG--UGGGGA-----------CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 35108 0.67 0.328602
Target:  5'- cCCCGUugaguggcagguccgGCcCCUCGUCuuCUCCUGCCUUc -3'
miRNA:   3'- -GGGCA---------------UGaGGAGCGGu-GGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 36076 0.66 0.390471
Target:  5'- gUCCGUggccgacgaACUUCUUgacguggucaGCCACCucuCCUGCCUCg -3'
miRNA:   3'- -GGGCA---------UGAGGAG----------CGGUGG---GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 37801 0.71 0.194336
Target:  5'- gCCCcacCUCCUCgGCCACCCggcgcaaUGCCCUc -3'
miRNA:   3'- -GGGcauGAGGAG-CGGUGGGg------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 37853 0.7 0.22626
Target:  5'- gCCCcUGCacagCCccuucgCGCCG-CCCUGCCCCg -3'
miRNA:   3'- -GGGcAUGa---GGa-----GCGGUgGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 40241 0.7 0.22626
Target:  5'- -gCGgGCUCUUCGCCGCCggggccuacguCCcGCCCCc -3'
miRNA:   3'- ggGCaUGAGGAGCGGUGG-----------GGaCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.