miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 668 0.69 0.249934
Target:  5'- gCCCGga--CgUCGCCgGCCaCCUGUCCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGG-UGG-GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 2311 0.66 0.40797
Target:  5'- gCUGgcCUgCCUCGCCACCg--GCCgCCg -3'
miRNA:   3'- gGGCauGA-GGAGCGGUGGggaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 3190 0.68 0.303365
Target:  5'- gCCGUcCU-CUCGCgGgCCCUGgCCCg -3'
miRNA:   3'- gGGCAuGAgGAGCGgUgGGGACgGGG- -5'
11419 5' -61.5 NC_003085.1 + 4035 0.66 0.390471
Target:  5'- gCCGUGa-CgaCGCCACCgC-GCCCCa -3'
miRNA:   3'- gGGCAUgaGgaGCGGUGGgGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 5794 0.71 0.194336
Target:  5'- gCCCGU-CUCCgcuGCaACCCC-GCCCCc -3'
miRNA:   3'- -GGGCAuGAGGag-CGgUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 6030 0.68 0.313572
Target:  5'- gCCCGgACgCCgCGCCAggaugaccugauucuCCCgaGCCCCa -3'
miRNA:   3'- -GGGCaUGaGGaGCGGU---------------GGGgaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 6173 0.69 0.275616
Target:  5'- aCCUGUGCUCCaUGCCcagcacggacacACUCCUGCgCg -3'
miRNA:   3'- -GGGCAUGAGGaGCGG------------UGGGGACGgGg -5'
11419 5' -61.5 NC_003085.1 + 6458 0.69 0.26252
Target:  5'- aCCCGUACUCCUgggcuccuucuaCGCCAaUCC-GCgCCa -3'
miRNA:   3'- -GGGCAUGAGGA------------GCGGUgGGGaCGgGG- -5'
11419 5' -61.5 NC_003085.1 + 6992 0.66 0.416901
Target:  5'- gCCGcuucggACUCCUCacuGCCAUCaCCggcGCCCUc -3'
miRNA:   3'- gGGCa-----UGAGGAG---CGGUGG-GGa--CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 7342 0.66 0.399159
Target:  5'- gCCGUGCauUCgCUUGCCGuCCUCcGCCaCCu -3'
miRNA:   3'- gGGCAUG--AG-GAGCGGU-GGGGaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 8776 0.66 0.373469
Target:  5'- aCCCGga--CgUCGUC-CCCCUGCgCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGGuGGGGACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 11786 0.69 0.261878
Target:  5'- gCCGcGCUCCgggcgugUCgGCUGCCCCaucgccgggUGCCCCg -3'
miRNA:   3'- gGGCaUGAGG-------AG-CGGUGGGG---------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 12855 0.67 0.325554
Target:  5'- gCCaCGcaaguUGC-CCUucCGCCACCCgUGCCCg -3'
miRNA:   3'- -GG-GC-----AUGaGGA--GCGGUGGGgACGGGg -5'
11419 5' -61.5 NC_003085.1 + 12983 0.68 0.295525
Target:  5'- cUCCGUGC-CCUgGCUACCuccaacaCCUaCCCCg -3'
miRNA:   3'- -GGGCAUGaGGAgCGGUGG-------GGAcGGGG- -5'
11419 5' -61.5 NC_003085.1 + 14143 0.68 0.309897
Target:  5'- gUCGUAUUCCUCaccgacaGCCGCCgcgaCCUGCUgCCg -3'
miRNA:   3'- gGGCAUGAGGAG-------CGGUGG----GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 16219 0.69 0.278297
Target:  5'- gCCGUGCUCCucaucgcggcuggcgUCGUCAUCCucgugCUGCgCCg -3'
miRNA:   3'- gGGCAUGAGG---------------AGCGGUGGG-----GACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 16610 0.66 0.40797
Target:  5'- uCCCGgGCggucCCgcggcgCGCgGCCUCUcggGCCCCa -3'
miRNA:   3'- -GGGCaUGa---GGa-----GCGgUGGGGA---CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 16896 0.69 0.275616
Target:  5'- gCCGaGCgaugagccaCCUCG-CACCCCaGCCCCc -3'
miRNA:   3'- gGGCaUGa--------GGAGCgGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 17316 0.66 0.40797
Target:  5'- gCCGUAacccaCCgCGCCACCagCC-GCCCCc -3'
miRNA:   3'- gGGCAUga---GGaGCGGUGG--GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 17557 0.67 0.348925
Target:  5'- uCCCGUG--CCUCGuCCGCCUC-GUUCCg -3'
miRNA:   3'- -GGGCAUgaGGAGC-GGUGGGGaCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.