miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 41981 0.76 0.087585
Target:  5'- uCCCaGUGacacgCCUCGCCGugUUCCUGCCCCg -3'
miRNA:   3'- -GGG-CAUga---GGAGCGGU--GGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 23698 0.67 0.341004
Target:  5'- gCCCGcgcagcagcCUCCUcCGUCaagacgGCCCCgGCCCCc -3'
miRNA:   3'- -GGGCau-------GAGGA-GCGG------UGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 12855 0.67 0.325554
Target:  5'- gCCaCGcaaguUGC-CCUucCGCCACCCgUGCCCg -3'
miRNA:   3'- -GG-GC-----AUGaGGA--GCGGUGGGgACGGGg -5'
11419 5' -61.5 NC_003085.1 + 40402 0.68 0.321021
Target:  5'- gCCGgcauccaACUCCUCaCCACCuucggaggcgcgcugCCUGCCgCCg -3'
miRNA:   3'- gGGCa------UGAGGAGcGGUGG---------------GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 6030 0.68 0.313572
Target:  5'- gCCCGgACgCCgCGCCAggaugaccugauucuCCCgaGCCCCa -3'
miRNA:   3'- -GGGCaUGaGGaGCGGU---------------GGGgaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 3190 0.68 0.303365
Target:  5'- gCCGUcCU-CUCGCgGgCCCUGgCCCg -3'
miRNA:   3'- gGGCAuGAgGAGCGgUgGGGACgGGG- -5'
11419 5' -61.5 NC_003085.1 + 42345 0.68 0.303365
Target:  5'- uCCUGgACuUCCuUCGCCGCCCgcucgcgcaUGCCCUc -3'
miRNA:   3'- -GGGCaUG-AGG-AGCGGUGGGg--------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 12983 0.68 0.295525
Target:  5'- cUCCGUGC-CCUgGCUACCuccaacaCCUaCCCCg -3'
miRNA:   3'- -GGGCAUGaGGAgCGGUGG-------GGAcGGGG- -5'
11419 5' -61.5 NC_003085.1 + 43960 0.68 0.289229
Target:  5'- -aCGUGCUcCCUCaCgGCCCg-GCCCCa -3'
miRNA:   3'- ggGCAUGA-GGAGcGgUGGGgaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 16219 0.69 0.278297
Target:  5'- gCCGUGCUCCucaucgcggcuggcgUCGUCAUCCucgugCUGCgCCg -3'
miRNA:   3'- gGGCAUGAGG---------------AGCGGUGGG-----GACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 16896 0.69 0.275616
Target:  5'- gCCGaGCgaugagccaCCUCG-CACCCCaGCCCCc -3'
miRNA:   3'- gGGCaUGa--------GGAGCgGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 6458 0.69 0.26252
Target:  5'- aCCCGUACUCCUgggcuccuucuaCGCCAaUCC-GCgCCa -3'
miRNA:   3'- -GGGCAUGAGGA------------GCGGUgGGGaCGgGG- -5'
11419 5' -61.5 NC_003085.1 + 11786 0.69 0.261878
Target:  5'- gCCGcGCUCCgggcgugUCgGCUGCCCCaucgccgggUGCCCCg -3'
miRNA:   3'- gGGCaUGAGG-------AG-CGGUGGGG---------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 46757 0.69 0.249934
Target:  5'- gCCCGaAgUCCUCGCCggaguccaccACCUCcGCCuCCg -3'
miRNA:   3'- -GGGCaUgAGGAGCGG----------UGGGGaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 668 0.69 0.249934
Target:  5'- gCCCGga--CgUCGCCgGCCaCCUGUCCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGG-UGG-GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 40241 0.7 0.22626
Target:  5'- -gCGgGCUCUUCGCCGCCggggccuacguCCcGCCCCc -3'
miRNA:   3'- ggGCaUGAGGAGCGGUGG-----------GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 40616 0.71 0.206605
Target:  5'- gCCUGUGCugacggccgcugccgUCCUCGUCGCCCUgacgcuggcUGCgCCg -3'
miRNA:   3'- -GGGCAUG---------------AGGAGCGGUGGGG---------ACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 49180 0.72 0.170811
Target:  5'- gCCCGg--UCCU-GCCGCCgCUGCUCCu -3'
miRNA:   3'- -GGGCaugAGGAgCGGUGGgGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 47316 0.75 0.101989
Target:  5'- -aCGUugUCCaccaucuccagcgCGCCGCCCUUGCCCa -3'
miRNA:   3'- ggGCAugAGGa------------GCGGUGGGGACGGGg -5'
11419 5' -61.5 NC_003085.1 + 29786 0.78 0.061254
Target:  5'- cCCUGgcggcaUGCUUCUCGuCCACCCCauuuuUGCCCCg -3'
miRNA:   3'- -GGGC------AUGAGGAGC-GGUGGGG-----ACGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.