miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 32351 0.69 0.269003
Target:  5'- uCCUGguagGCgUCCUUGCCGuggUCCCUGCCg- -3'
miRNA:   3'- -GGGCa---UG-AGGAGCGGU---GGGGACGGgg -5'
11419 5' -61.5 NC_003085.1 + 17316 0.66 0.40797
Target:  5'- gCCGUAacccaCCgCGCCACCagCC-GCCCCc -3'
miRNA:   3'- gGGCAUga---GGaGCGGUGG--GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 16610 0.66 0.40797
Target:  5'- uCCCGgGCggucCCgcggcgCGCgGCCUCUcggGCCCCa -3'
miRNA:   3'- -GGGCaUGa---GGa-----GCGgUGGGGA---CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 27807 0.66 0.373469
Target:  5'- gCCGgaUGCUgccgaaCUUCGCCuucacCCCCUGCgCCa -3'
miRNA:   3'- gGGC--AUGA------GGAGCGGu----GGGGACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 31467 0.67 0.365159
Target:  5'- gUCCGcGCU-CUCGCaGCUCCgUGCCCUg -3'
miRNA:   3'- -GGGCaUGAgGAGCGgUGGGG-ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 7342 0.66 0.399159
Target:  5'- gCCGUGCauUCgCUUGCCGuCCUCcGCCaCCu -3'
miRNA:   3'- gGGCAUG--AG-GAGCGGU-GGGGaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 24510 0.66 0.373469
Target:  5'- gCCGUACUCCgUCGUCugguagGCCaugugCCUGUCuCCg -3'
miRNA:   3'- gGGCAUGAGG-AGCGG------UGG-----GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 29861 0.66 0.373469
Target:  5'- aCCC--ACUCCgCGuCCuuCCCUGCCaCCu -3'
miRNA:   3'- -GGGcaUGAGGaGC-GGugGGGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 6173 0.69 0.275616
Target:  5'- aCCUGUGCUCCaUGCCcagcacggacacACUCCUGCgCg -3'
miRNA:   3'- -GGGCAUGAGGaGCGG------------UGGGGACGgGg -5'
11419 5' -61.5 NC_003085.1 + 48131 0.7 0.215152
Target:  5'- gUCCGUACUCCagCGCCAUCgCaGUgCCa -3'
miRNA:   3'- -GGGCAUGAGGa-GCGGUGGgGaCGgGG- -5'
11419 5' -61.5 NC_003085.1 + 43034 1.13 0.000139
Target:  5'- uCCCGUACUCCUCGCCACCCCUGCCCCa -3'
miRNA:   3'- -GGGCAUGAGGAGCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 34138 0.66 0.390471
Target:  5'- gCCCGU-CUCa-CGCCcuACCUCUaugggcucgacGCCCCg -3'
miRNA:   3'- -GGGCAuGAGgaGCGG--UGGGGA-----------CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 26972 0.66 0.399159
Target:  5'- gUCgGUGCcgUCCgUCGCCA-CCgUGCCCUc -3'
miRNA:   3'- -GGgCAUG--AGG-AGCGGUgGGgACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 35108 0.67 0.328602
Target:  5'- cCCCGUugaguggcagguccgGCcCCUCGUCuuCUCCUGCCUUc -3'
miRNA:   3'- -GGGCA---------------UGaGGAGCGGu-GGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 14143 0.68 0.309897
Target:  5'- gUCGUAUUCCUCaccgacaGCCGCCgcgaCCUGCUgCCg -3'
miRNA:   3'- gGGCAUGAGGAG-------CGGUGG----GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 36076 0.66 0.390471
Target:  5'- gUCCGUggccgacgaACUUCUUgacguggucaGCCACCucuCCUGCCUCg -3'
miRNA:   3'- -GGGCA---------UGAGGAG----------CGGUGG---GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 37853 0.7 0.22626
Target:  5'- gCCCcUGCacagCCccuucgCGCCG-CCCUGCCCCg -3'
miRNA:   3'- -GGGcAUGa---GGa-----GCGGUgGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 48905 0.71 0.194336
Target:  5'- cCCUGcACUUCgacgGCCACCCC-GCCCUg -3'
miRNA:   3'- -GGGCaUGAGGag--CGGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 8776 0.66 0.373469
Target:  5'- aCCCGga--CgUCGUC-CCCCUGCgCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGGuGGGGACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 17557 0.67 0.348925
Target:  5'- uCCCGUG--CCUCGuCCGCCUC-GUUCCg -3'
miRNA:   3'- -GGGCAUgaGGAGC-GGUGGGGaCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.