miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 43034 1.13 0.000139
Target:  5'- uCCCGUACUCCUCGCCACCCCUGCCCCa -3'
miRNA:   3'- -GGGCAUGAGGAGCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 18937 0.82 0.030459
Target:  5'- gCUGUGCUCCacgCGCCGCCuCCUGUCCUg -3'
miRNA:   3'- gGGCAUGAGGa--GCGGUGG-GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 29786 0.78 0.061254
Target:  5'- cCCUGgcggcaUGCUUCUCGuCCACCCCauuuuUGCCCCg -3'
miRNA:   3'- -GGGC------AUGAGGAGC-GGUGGGG-----ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 41981 0.76 0.087585
Target:  5'- uCCCaGUGacacgCCUCGCCGugUUCCUGCCCCg -3'
miRNA:   3'- -GGG-CAUga---GGAGCGGU--GGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 47316 0.75 0.101989
Target:  5'- -aCGUugUCCaccaucuccagcgCGCCGCCCUUGCCCa -3'
miRNA:   3'- ggGCAugAGGa------------GCGGUGGGGACGGGg -5'
11419 5' -61.5 NC_003085.1 + 32404 0.74 0.111796
Target:  5'- gCCGUACUUCUCGaCGCCCUcgaaGCUCCg -3'
miRNA:   3'- gGGCAUGAGGAGCgGUGGGGa---CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 28312 0.73 0.13482
Target:  5'- uCCaCGUACcaguccaccuUCCg-GCCGCCCUUGUCCCa -3'
miRNA:   3'- -GG-GCAUG----------AGGagCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 49180 0.72 0.170811
Target:  5'- gCCCGg--UCCU-GCCGCCgCUGCUCCu -3'
miRNA:   3'- -GGGCaugAGGAgCGGUGGgGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 49104 0.71 0.1799
Target:  5'- uCCCGUugUCggCGCuCAUCCCUugccGCCCUu -3'
miRNA:   3'- -GGGCAugAGgaGCG-GUGGGGA----CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 37801 0.71 0.194336
Target:  5'- gCCCcacCUCCUCgGCCACCCggcgcaaUGCCCUc -3'
miRNA:   3'- -GGGcauGAGGAG-CGGUGGGg------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 48905 0.71 0.194336
Target:  5'- cCCUGcACUUCgacgGCCACCCC-GCCCUg -3'
miRNA:   3'- -GGGCaUGAGGag--CGGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 5794 0.71 0.194336
Target:  5'- gCCCGU-CUCCgcuGCaACCCC-GCCCCc -3'
miRNA:   3'- -GGGCAuGAGGag-CGgUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 40616 0.71 0.206605
Target:  5'- gCCUGUGCugacggccgcugccgUCCUCGUCGCCCUgacgcuggcUGCgCCg -3'
miRNA:   3'- -GGGCAUG---------------AGGAGCGGUGGGG---------ACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 48131 0.7 0.215152
Target:  5'- gUCCGUACUCCagCGCCAUCgCaGUgCCa -3'
miRNA:   3'- -GGGCAUGAGGa-GCGGUGGgGaCGgGG- -5'
11419 5' -61.5 NC_003085.1 + 37853 0.7 0.22626
Target:  5'- gCCCcUGCacagCCccuucgCGCCG-CCCUGCCCCg -3'
miRNA:   3'- -GGGcAUGa---GGa-----GCGGUgGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 40241 0.7 0.22626
Target:  5'- -gCGgGCUCUUCGCCGCCggggccuacguCCcGCCCCc -3'
miRNA:   3'- ggGCaUGAGGAGCGGUGG-----------GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 41095 0.7 0.237851
Target:  5'- uUCCGgcugGCUCCg-GCCACCCUUucuuccagccGCUCCa -3'
miRNA:   3'- -GGGCa---UGAGGagCGGUGGGGA----------CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 668 0.69 0.249934
Target:  5'- gCCCGga--CgUCGCCgGCCaCCUGUCCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGG-UGG-GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 46757 0.69 0.249934
Target:  5'- gCCCGaAgUCCUCGCCggaguccaccACCUCcGCCuCCg -3'
miRNA:   3'- -GGGCaUgAGGAGCGG----------UGGGGaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 11786 0.69 0.261878
Target:  5'- gCCGcGCUCCgggcgugUCgGCUGCCCCaucgccgggUGCCCCg -3'
miRNA:   3'- gGGCaUGAGG-------AG-CGGUGGGG---------ACGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.