miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 49180 0.72 0.170811
Target:  5'- gCCCGg--UCCU-GCCGCCgCUGCUCCu -3'
miRNA:   3'- -GGGCaugAGGAgCGGUGGgGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 49104 0.71 0.1799
Target:  5'- uCCCGUugUCggCGCuCAUCCCUugccGCCCUu -3'
miRNA:   3'- -GGGCAugAGgaGCG-GUGGGGA----CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 48905 0.71 0.194336
Target:  5'- cCCUGcACUUCgacgGCCACCCC-GCCCUg -3'
miRNA:   3'- -GGGCaUGAGGag--CGGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 48131 0.7 0.215152
Target:  5'- gUCCGUACUCCagCGCCAUCgCaGUgCCa -3'
miRNA:   3'- -GGGCAUGAGGa-GCGGUGGgGaCGgGG- -5'
11419 5' -61.5 NC_003085.1 + 47316 0.75 0.101989
Target:  5'- -aCGUugUCCaccaucuccagcgCGCCGCCCUUGCCCa -3'
miRNA:   3'- ggGCAugAGGa------------GCGGUGGGGACGGGg -5'
11419 5' -61.5 NC_003085.1 + 46757 0.69 0.249934
Target:  5'- gCCCGaAgUCCUCGCCggaguccaccACCUCcGCCuCCg -3'
miRNA:   3'- -GGGCaUgAGGAGCGG----------UGGGGaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 46665 0.66 0.390471
Target:  5'- gCCGagGCgCUUCGCCGCCgCCUggagcGCCgCCg -3'
miRNA:   3'- gGGCa-UGaGGAGCGGUGG-GGA-----CGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 45771 0.67 0.341004
Target:  5'- aCCGgacgcgGCgucaggaCUCGCCGCgccguCCCUGCCuCCa -3'
miRNA:   3'- gGGCa-----UGag-----GAGCGGUG-----GGGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 43960 0.68 0.289229
Target:  5'- -aCGUGCUcCCUCaCgGCCCg-GCCCCa -3'
miRNA:   3'- ggGCAUGA-GGAGcGgUGGGgaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 43034 1.13 0.000139
Target:  5'- uCCCGUACUCCUCGCCACCCCUGCCCCa -3'
miRNA:   3'- -GGGCAUGAGGAGCGGUGGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 42345 0.68 0.303365
Target:  5'- uCCUGgACuUCCuUCGCCGCCCgcucgcgcaUGCCCUc -3'
miRNA:   3'- -GGGCaUG-AGG-AGCGGUGGGg--------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 41981 0.76 0.087585
Target:  5'- uCCCaGUGacacgCCUCGCCGugUUCCUGCCCCg -3'
miRNA:   3'- -GGG-CAUga---GGAGCGGU--GGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 41095 0.7 0.237851
Target:  5'- uUCCGgcugGCUCCg-GCCACCCUUucuuccagccGCUCCa -3'
miRNA:   3'- -GGGCa---UGAGGagCGGUGGGGA----------CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 40616 0.71 0.206605
Target:  5'- gCCUGUGCugacggccgcugccgUCCUCGUCGCCCUgacgcuggcUGCgCCg -3'
miRNA:   3'- -GGGCAUG---------------AGGAGCGGUGGGG---------ACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 40402 0.68 0.321021
Target:  5'- gCCGgcauccaACUCCUCaCCACCuucggaggcgcgcugCCUGCCgCCg -3'
miRNA:   3'- gGGCa------UGAGGAGcGGUGG---------------GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 40241 0.7 0.22626
Target:  5'- -gCGgGCUCUUCGCCGCCggggccuacguCCcGCCCCc -3'
miRNA:   3'- ggGCaUGAGGAGCGGUGG-----------GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 37853 0.7 0.22626
Target:  5'- gCCCcUGCacagCCccuucgCGCCG-CCCUGCCCCg -3'
miRNA:   3'- -GGGcAUGa---GGa-----GCGGUgGGGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 37801 0.71 0.194336
Target:  5'- gCCCcacCUCCUCgGCCACCCggcgcaaUGCCCUc -3'
miRNA:   3'- -GGGcauGAGGAG-CGGUGGGg------ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 36076 0.66 0.390471
Target:  5'- gUCCGUggccgacgaACUUCUUgacguggucaGCCACCucuCCUGCCUCg -3'
miRNA:   3'- -GGGCA---------UGAGGAG----------CGGUGG---GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 35108 0.67 0.328602
Target:  5'- cCCCGUugaguggcagguccgGCcCCUCGUCuuCUCCUGCCUUc -3'
miRNA:   3'- -GGGCA---------------UGaGGAGCGGu-GGGGACGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.