Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11420 | 5' | -56.9 | NC_003085.1 | + | 24453 | 0.73 | 0.231426 |
Target: 5'- cGCU-GUGGC-CCUUCUGGcGCUCGCa -3' miRNA: 3'- cCGAgUACCGuGGGAGGCCuUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 29945 | 0.68 | 0.507873 |
Target: 5'- uGGC-CAUGGCacaggcccuccagcaGCCCUCCGGcaa--GCa -3' miRNA: 3'- -CCGaGUACCG---------------UGGGAGGCCuugagCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 12260 | 0.67 | 0.535072 |
Target: 5'- aGUUCAUGcGCGaCCggugcaUGGAACUCGCa -3' miRNA: 3'- cCGAGUAC-CGUgGGag----GCCUUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 32943 | 0.67 | 0.556338 |
Target: 5'- cGGCUCAacaGGCGCgCCUgCCau-GCUUGCg -3' miRNA: 3'- -CCGAGUa--CCGUG-GGA-GGccuUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 12012 | 0.66 | 0.577841 |
Target: 5'- cGGCcugaCGcUGGCGCaCCUgCCGGuGCUgCGCg -3' miRNA: 3'- -CCGa---GU-ACCGUG-GGA-GGCCuUGA-GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 21564 | 0.66 | 0.610404 |
Target: 5'- aGCUCGUGGaCGCCCUgcaCCaGGuGACggGCa -3' miRNA: 3'- cCGAGUACC-GUGGGA---GG-CC-UUGagCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 35264 | 0.66 | 0.610404 |
Target: 5'- cGGCUCugcaGGCACuUCUgaaagcugcCCGGAACaUUGCu -3' miRNA: 3'- -CCGAGua--CCGUG-GGA---------GGCCUUG-AGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 21882 | 0.66 | 0.621307 |
Target: 5'- aGGC-CGUGu--CCCUCCaGGACUuCGCg -3' miRNA: 3'- -CCGaGUACcguGGGAGGcCUUGA-GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 15951 | 0.66 | 0.621307 |
Target: 5'- cGGCUgGUGGCGCUC-CCuuGGC-CGCu -3' miRNA: 3'- -CCGAgUACCGUGGGaGGccUUGaGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 17466 | 0.68 | 0.503739 |
Target: 5'- cGCUCGUacuggcgaaaGGCACUCgCgCGGAAC-CGCg -3' miRNA: 3'- cCGAGUA----------CCGUGGGaG-GCCUUGaGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 22914 | 0.68 | 0.503739 |
Target: 5'- aGGCUgcCggGGCgaaGCCCUCCGaGGC-CGCg -3' miRNA: 3'- -CCGA--GuaCCG---UGGGAGGCcUUGaGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 14930 | 0.72 | 0.276729 |
Target: 5'- aGCgCGUGGCGCUccaaCUCgCGGAACUgCGCg -3' miRNA: 3'- cCGaGUACCGUGG----GAG-GCCUUGA-GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 18109 | 0.72 | 0.305659 |
Target: 5'- cGGCUgcgCAUGGCGgCCUaCCGGuACguccgCGCg -3' miRNA: 3'- -CCGA---GUACCGUgGGA-GGCCuUGa----GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 9146 | 0.7 | 0.361727 |
Target: 5'- ------cGGCACCUggCGGAGCUCGCc -3' miRNA: 3'- ccgaguaCCGUGGGagGCCUUGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 33338 | 0.7 | 0.387853 |
Target: 5'- uGGUcaUCcgGGCGucgaCCUCCaGGAugUCGCc -3' miRNA: 3'- -CCG--AGuaCCGUg---GGAGG-CCUugAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 4454 | 0.69 | 0.405946 |
Target: 5'- cGC-CGUcGGCGCacuguUCUCCGGggUUCGCc -3' miRNA: 3'- cCGaGUA-CCGUG-----GGAGGCCuuGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 12610 | 0.69 | 0.415189 |
Target: 5'- cGCgCGUGGCGCCCcgggcgCUGGAuucugacaauCUCGCu -3' miRNA: 3'- cCGaGUACCGUGGGa-----GGCCUu---------GAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 17951 | 0.69 | 0.453413 |
Target: 5'- gGGCUCugcuggGGCACCUgaagcgCCGGcAGCgcgggcCGCa -3' miRNA: 3'- -CCGAGua----CCGUGGGa-----GGCC-UUGa-----GCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 9453 | 0.68 | 0.473229 |
Target: 5'- cGCUCAUGGacgaGCUCgaggCCGGGcaAUUCGUc -3' miRNA: 3'- cCGAGUACCg---UGGGa---GGCCU--UGAGCG- -5' |
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11420 | 5' | -56.9 | NC_003085.1 | + | 41203 | 1.13 | 0.000332 |
Target: 5'- gGGCUCAUGGCACCCUCCGGAACUCGCu -3' miRNA: 3'- -CCGAGUACCGUGGGAGGCCUUGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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