miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11421 5' -57.1 NC_003085.1 + 2310 0.66 0.572083
Target:  5'- cGCUGGCcugccucgccaCCGGCCGCCg---CUUCa -3'
miRNA:   3'- cCGACCGa----------GGCCGGUGGgaaaGAAGg -5'
11421 5' -57.1 NC_003085.1 + 2630 0.71 0.301215
Target:  5'- cGCUGGCUCCcaGCUACCCg--CUugggCCg -3'
miRNA:   3'- cCGACCGAGGc-CGGUGGGaaaGAa---GG- -5'
11421 5' -57.1 NC_003085.1 + 6374 0.7 0.382762
Target:  5'- uGCUGGCggCCGGUCG---UUUCUUCCu -3'
miRNA:   3'- cCGACCGa-GGCCGGUgggAAAGAAGG- -5'
11421 5' -57.1 NC_003085.1 + 6697 0.67 0.550593
Target:  5'- aGC-GGCUUgCGGCCGCCCUgca--CCg -3'
miRNA:   3'- cCGaCCGAG-GCCGGUGGGAaagaaGG- -5'
11421 5' -57.1 NC_003085.1 + 8623 0.66 0.582905
Target:  5'- aGGUUGGCcagcCCGGCCGCCg--UCa--- -3'
miRNA:   3'- -CCGACCGa---GGCCGGUGGgaaAGaagg -5'
11421 5' -57.1 NC_003085.1 + 13558 0.66 0.615579
Target:  5'- cGGCUGGCcgUGGCaugGCCCUgggacUCCg -3'
miRNA:   3'- -CCGACCGagGCCGg--UGGGAaaga-AGG- -5'
11421 5' -57.1 NC_003085.1 + 23224 0.67 0.53994
Target:  5'- gGGCU-GCUCCagacGGCCGCCgCg--CUUCg -3'
miRNA:   3'- -CCGAcCGAGG----CCGGUGG-GaaaGAAGg -5'
11421 5' -57.1 NC_003085.1 + 24142 0.66 0.572083
Target:  5'- cGGCUGGUacUCCGGCUAUgaCgugCUaCCg -3'
miRNA:   3'- -CCGACCG--AGGCCGGUGg-GaaaGAaGG- -5'
11421 5' -57.1 NC_003085.1 + 24307 0.68 0.467688
Target:  5'- aGGCcacGGUcgCCGGCCACaCCgcgCUUCg -3'
miRNA:   3'- -CCGa--CCGa-GGCCGGUG-GGaaaGAAGg -5'
11421 5' -57.1 NC_003085.1 + 25090 0.67 0.550593
Target:  5'- aGGCcauugaUGGC-CCGGCCGCCaaaggCcgUCCc -3'
miRNA:   3'- -CCG------ACCGaGGCCGGUGGgaaa-Ga-AGG- -5'
11421 5' -57.1 NC_003085.1 + 25453 0.67 0.529357
Target:  5'- cGGCcGGUUucuggguggUCGGCCGCCgCUcUUCUUCa -3'
miRNA:   3'- -CCGaCCGA---------GGCCGGUGG-GA-AAGAAGg -5'
11421 5' -57.1 NC_003085.1 + 27179 0.66 0.572083
Target:  5'- cGCUGGCUUCGGCguCUCUcacgcaUUCgUCa -3'
miRNA:   3'- cCGACCGAGGCCGguGGGA------AAGaAGg -5'
11421 5' -57.1 NC_003085.1 + 27352 0.69 0.409005
Target:  5'- cGGCgccgGGCUCugcugggCGGCCugCUUcugcgccUCUUCCg -3'
miRNA:   3'- -CCGa---CCGAG-------GCCGGugGGAa------AGAAGG- -5'
11421 5' -57.1 NC_003085.1 + 27534 0.67 0.53994
Target:  5'- aGCUGGCgaugCCGGacagCACCUccaUCUUCUc -3'
miRNA:   3'- cCGACCGa---GGCCg---GUGGGaa-AGAAGG- -5'
11421 5' -57.1 NC_003085.1 + 28329 0.66 0.604661
Target:  5'- -----cUUCCGGCCGCCCUUg--UCCc -3'
miRNA:   3'- ccgaccGAGGCCGGUGGGAAagaAGG- -5'
11421 5' -57.1 NC_003085.1 + 28625 0.68 0.487859
Target:  5'- cGCU-GCUgCGGCCGgCCUUUCgauaccccUUCCu -3'
miRNA:   3'- cCGAcCGAgGCCGGUgGGAAAG--------AAGG- -5'
11421 5' -57.1 NC_003085.1 + 30089 0.73 0.246138
Target:  5'- uGCUGGCUcagaaggacgCCGGCCGCCUccUCUacacggacgccaUCCg -3'
miRNA:   3'- cCGACCGA----------GGCCGGUGGGaaAGA------------AGG- -5'
11421 5' -57.1 NC_003085.1 + 34429 0.66 0.582905
Target:  5'- gGGCUgcGGCUUgGGCCgGCCCag-CggcaagUCCa -3'
miRNA:   3'- -CCGA--CCGAGgCCGG-UGGGaaaGa-----AGG- -5'
11421 5' -57.1 NC_003085.1 + 34760 0.73 0.252539
Target:  5'- gGGCUGGcCUUCGGCCuugGCCU--UCgUCCa -3'
miRNA:   3'- -CCGACC-GAGGCCGG---UGGGaaAGaAGG- -5'
11421 5' -57.1 NC_003085.1 + 35118 0.69 0.409929
Target:  5'- uGGCaGG-UCCGGCC-CCUcgUCUUCUc -3'
miRNA:   3'- -CCGaCCgAGGCCGGuGGGaaAGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.