Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11422 | 3' | -55.7 | NC_003085.1 | + | 24706 | 0.71 | 0.390818 |
Target: 5'- gGACGGCGGCAUcggcgGCUucGCGGg---UGCc -3' miRNA: 3'- gCUGCCGCCGUA-----CGG--UGCCaacaACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 18124 | 0.69 | 0.477454 |
Target: 5'- gGGCGGgaCGGCcgGCCugGGacGUcUGCu -3' miRNA: 3'- gCUGCC--GCCGuaCGGugCCaaCA-ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 17237 | 0.68 | 0.550893 |
Target: 5'- -cGCGGCGcccCGUGCuCugGGcggUGUUGCg -3' miRNA: 3'- gcUGCCGCc--GUACG-GugCCa--ACAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 14921 | 0.68 | 0.540155 |
Target: 5'- cCGGCuGGUGGCGcucgcgGCCGCuG-UGUUGCu -3' miRNA: 3'- -GCUG-CCGCCGUa-----CGGUGcCaACAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 12017 | 0.7 | 0.437711 |
Target: 5'- -uGCGGUGGCggGCgCGgGGUUGgcGCu -3' miRNA: 3'- gcUGCCGCCGuaCG-GUgCCAACaaCG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 11102 | 0.68 | 0.540155 |
Target: 5'- uCGcCGGCGGCAuucgUGCC-CaGGaaGUUGCg -3' miRNA: 3'- -GCuGCCGCCGU----ACGGuG-CCaaCAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 9506 | 0.72 | 0.339057 |
Target: 5'- aCGAUGGCGGCGcGCgGCGGgucaucgGCu -3' miRNA: 3'- -GCUGCCGCCGUaCGgUGCCaacaa--CG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 8795 | 0.68 | 0.550893 |
Target: 5'- gCGcCGGCGGCu--CCGCGag-GUUGCg -3' miRNA: 3'- -GCuGCCGCCGuacGGUGCcaaCAACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 5539 | 0.72 | 0.330929 |
Target: 5'- -aACGGCGGCG-GCCAucCGGUUGgcggacaUGCu -3' miRNA: 3'- gcUGCCGCCGUaCGGU--GCCAACa------ACG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 3872 | 0.68 | 0.550893 |
Target: 5'- uCGACGGCGcGCccgccgucUGUCGCGGUg---GCa -3' miRNA: 3'- -GCUGCCGC-CGu-------ACGGUGCCAacaaCG- -5' |
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11422 | 3' | -55.7 | NC_003085.1 | + | 2509 | 0.66 | 0.660451 |
Target: 5'- uGACGGaCGGUGUGCCcgcguCGGccccUGCg -3' miRNA: 3'- gCUGCC-GCCGUACGGu----GCCaacaACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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