miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11422 3' -55.7 NC_003085.1 + 32138 0.7 0.437711
Target:  5'- aCGGgGGCGGCugGUGgCGCGGUggGUuacgGCg -3'
miRNA:   3'- -GCUgCCGCCG--UACgGUGCCAa-CAa---CG- -5'
11422 3' -55.7 NC_003085.1 + 40556 0.7 0.455366
Target:  5'- aCGACGGCacGGUgacgGCCGCGGUggaccccaagUGCa -3'
miRNA:   3'- -GCUGCCG--CCGua--CGGUGCCAaca-------ACG- -5'
11422 3' -55.7 NC_003085.1 + 35785 0.69 0.497985
Target:  5'- gCGACGGcCGGUguccuUGuCCAUGGg-GUUGCg -3'
miRNA:   3'- -GCUGCC-GCCGu----AC-GGUGCCaaCAACG- -5'
11422 3' -55.7 NC_003085.1 + 38195 0.68 0.5189
Target:  5'- gGGCuGGCGGCAacucggGCgGCGGUggcucgUGCa -3'
miRNA:   3'- gCUG-CCGCCGUa-----CGgUGCCAaca---ACG- -5'
11422 3' -55.7 NC_003085.1 + 3872 0.68 0.550893
Target:  5'- uCGACGGCGcGCccgccgucUGUCGCGGUg---GCa -3'
miRNA:   3'- -GCUGCCGC-CGu-------ACGGUGCCAacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 46013 0.67 0.593314
Target:  5'- aCGACGGCcgggcagGGCAUGUCAgUGGgcucUGCg -3'
miRNA:   3'- -GCUGCCG-------CCGUACGGU-GCCaacaACG- -5'
11422 3' -55.7 NC_003085.1 + 41561 0.66 0.638435
Target:  5'- -cGCGGCGGCA-GUCGCGGga---GCc -3'
miRNA:   3'- gcUGCCGCCGUaCGGUGCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 32046 0.66 0.649451
Target:  5'- uGGgGGCGGCGagugGCCugGGggacaGCa -3'
miRNA:   3'- gCUgCCGCCGUa---CGGugCCaacaaCG- -5'
11422 3' -55.7 NC_003085.1 + 27511 0.66 0.660451
Target:  5'- aCGACGGCGGCGccGgCAUGGaUGa--- -3'
miRNA:   3'- -GCUGCCGCCGUa-CgGUGCCaACaacg -5'
11422 3' -55.7 NC_003085.1 + 42381 0.66 0.671424
Target:  5'- --uCGGCGGCAUGagCGCGGgccUUGUc -3'
miRNA:   3'- gcuGCCGCCGUACg-GUGCCaacAACG- -5'
11422 3' -55.7 NC_003085.1 + 41387 0.73 0.299862
Target:  5'- uGACGGUGGUggGUgACGGccgUGUUGUc -3'
miRNA:   3'- gCUGCCGCCGuaCGgUGCCa--ACAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.