miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 11455 0.66 0.434106
Target:  5'- uGGGGCUGcACCGCCgggguccagacgaaACACggauaCUGCaCGCa -3'
miRNA:   3'- -CCCCGGCuUGGUGG--------------UGUG-----GACG-GCGg -5'
11424 5' -60.7 NC_003085.1 + 11456 0.69 0.262317
Target:  5'- uGGGGCCGAcgcggugugaGCguCC-CACCaccGCCGCa -3'
miRNA:   3'- -CCCCGGCU----------UGguGGuGUGGa--CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 11555 0.7 0.231516
Target:  5'- cGGGGCC-AugCGCCAacgcaccguCCUGCCcgcGCCu -3'
miRNA:   3'- -CCCCGGcUugGUGGUgu-------GGACGG---CGG- -5'
11424 5' -60.7 NC_003085.1 + 12012 0.67 0.391699
Target:  5'- -cGGCCuGAcGCUGgCGCACCUGCCGgUg -3'
miRNA:   3'- ccCCGG-CU-UGGUgGUGUGGACGGCgG- -5'
11424 5' -60.7 NC_003085.1 + 12241 0.72 0.169902
Target:  5'- cGGcGGCUGGGCCGCCAgaAUUgaagGCCGCUg -3'
miRNA:   3'- -CC-CCGGCUUGGUGGUg-UGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12392 0.67 0.357801
Target:  5'- aGGGCCGGguGCUGCUGCucgacCCggcgggGCCGCUg -3'
miRNA:   3'- cCCCGGCU--UGGUGGUGu----GGa-----CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12546 0.66 0.446299
Target:  5'- aGGGau--GCCACC-CGCC-GCCGCUg -3'
miRNA:   3'- cCCCggcuUGGUGGuGUGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12598 0.71 0.193569
Target:  5'- uGGuGCCGGA-CACCACcgGgUUGCCGCCa -3'
miRNA:   3'- cCC-CGGCUUgGUGGUG--UgGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12742 0.71 0.214536
Target:  5'- aGGGGCCGGAgguggugcgugUCgaggugGCCugGggugaugccCCUGCCGCCg -3'
miRNA:   3'- -CCCCGGCUU-----------GG------UGGugU---------GGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 14155 0.76 0.09139
Target:  5'- ---aCCGAcaGCCGCCGCgACCUGCUGCCg -3'
miRNA:   3'- ccccGGCU--UGGUGGUG-UGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 14352 0.71 0.214536
Target:  5'- aGGGGCCGGACCugC-CACUcaacggggUGaCGUCg -3'
miRNA:   3'- -CCCCGGCUUGGugGuGUGG--------ACgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 14917 0.69 0.275542
Target:  5'- cGGGCCGGcugguggcgcucGCgGCCGCuguguugcugACgCUGUCGCCg -3'
miRNA:   3'- cCCCGGCU------------UGgUGGUG----------UG-GACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 15035 0.67 0.391699
Target:  5'- uGGGCCGGcCCaaGCCGCAgCCcaggGCCaaaGCCu -3'
miRNA:   3'- cCCCGGCUuGG--UGGUGU-GGa---CGG---CGG- -5'
11424 5' -60.7 NC_003085.1 + 15188 0.71 0.214536
Target:  5'- -cGGCUGAGCCGgUGCGCCagcGCCGCg -3'
miRNA:   3'- ccCCGGCUUGGUgGUGUGGa--CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 15272 0.69 0.274868
Target:  5'- -cGGCCGAGcucacCCGCCGCGCCcgcgucaUGCUgGCCc -3'
miRNA:   3'- ccCCGGCUU-----GGUGGUGUGG-------ACGG-CGG- -5'
11424 5' -60.7 NC_003085.1 + 15626 0.7 0.249614
Target:  5'- uGGGCCGGugGCCGggcggagagcguCCACAacaUUGCUGCCc -3'
miRNA:   3'- cCCCGGCU--UGGU------------GGUGUg--GACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 16885 0.71 0.220074
Target:  5'- cGGGGCa-AGCCcCCuCGCCU-CCGCCa -3'
miRNA:   3'- -CCCCGgcUUGGuGGuGUGGAcGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 16894 0.67 0.348847
Target:  5'- -aGGCCGAgcgaugaGCCACCucGCACCccagcccCCGCCc -3'
miRNA:   3'- ccCCGGCU-------UGGUGG--UGUGGac-----GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 17308 0.75 0.104816
Target:  5'- -uGGCCGAcgccguaacCCACCGCGCCaccaGCCGCCc -3'
miRNA:   3'- ccCCGGCUu--------GGUGGUGUGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 17679 0.69 0.282352
Target:  5'- -cGGCCGGGCCGCUuCGCCcaaCCGCa -3'
miRNA:   3'- ccCCGGCUUGGUGGuGUGGac-GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.