miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 4031 0.67 0.383031
Target:  5'- uGGuGCCGugacgacGCCACCGCGCCccaUGCuuuCGCUg -3'
miRNA:   3'- cCC-CGGCu------UGGUGGUGUGG---ACG---GCGG- -5'
11424 5' -60.7 NC_003085.1 + 4102 0.71 0.220074
Target:  5'- uGGGCCGGGCgGuCCAgG-CUGCCaGCCa -3'
miRNA:   3'- cCCCGGCUUGgU-GGUgUgGACGG-CGG- -5'
11424 5' -60.7 NC_003085.1 + 4133 0.7 0.248372
Target:  5'- gGGGGCCGAccucguuagcgauGCCcuugaaaACCACGCCU-CCGaCg -3'
miRNA:   3'- -CCCCGGCU-------------UGG-------UGGUGUGGAcGGCgG- -5'
11424 5' -60.7 NC_003085.1 + 5149 0.66 0.446299
Target:  5'- aGGaGGCCGAcgcgaaggcaGCgGCCAU-CCUGgCGCg -3'
miRNA:   3'- -CC-CCGGCU----------UGgUGGUGuGGACgGCGg -5'
11424 5' -60.7 NC_003085.1 + 5947 0.7 0.255901
Target:  5'- cGGcGCCGuucCCGuCCACGCCggGCUGCUg -3'
miRNA:   3'- cCC-CGGCuu-GGU-GGUGUGGa-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 6706 0.76 0.088907
Target:  5'- -cGGCCGcccugCACCGCACCcaUGCCGCCg -3'
miRNA:   3'- ccCCGGCuug--GUGGUGUGG--ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 6716 0.68 0.33376
Target:  5'- uGGauGCCGu-CCACCGCGCCcGCauCGCCc -3'
miRNA:   3'- cCC--CGGCuuGGUGGUGUGGaCG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 6744 0.66 0.427621
Target:  5'- -uGGUCcGACUGCCcgGCCUGCCGCg -3'
miRNA:   3'- ccCCGGcUUGGUGGugUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 7333 0.66 0.436903
Target:  5'- aGGcGGCUGAggacgcggGCUACaCGCGCCccugGgCGCCg -3'
miRNA:   3'- -CC-CCGGCU--------UGGUG-GUGUGGa---CgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 7877 0.69 0.268864
Target:  5'- uGGGGCuUGAGCCGuucgugcugacUCugGCucccgcgaCUGCCGCCg -3'
miRNA:   3'- -CCCCG-GCUUGGU-----------GGugUG--------GACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 8189 0.7 0.243455
Target:  5'- uGGGcGCUGugcauggcCCGCCAguccaGCCUGCCGCg -3'
miRNA:   3'- -CCC-CGGCuu------GGUGGUg----UGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 8899 0.7 0.237422
Target:  5'- uGGGGUCcaccGCgGCCGuCACCgUGCCGUCg -3'
miRNA:   3'- -CCCCGGcu--UGgUGGU-GUGG-ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 9772 0.73 0.152866
Target:  5'- cGGcGGagagaCGAGCCuCCAgCGCCUGCUGCUg -3'
miRNA:   3'- -CC-CCg----GCUUGGuGGU-GUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 10488 0.67 0.366915
Target:  5'- cGGGGCCGucUCACCGacgauggcuCCguugaggacgacccaGCCGCCa -3'
miRNA:   3'- -CCCCGGCuuGGUGGUgu-------GGa--------------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 10670 0.67 0.383031
Target:  5'- cGGGGCUgccggcgugcuGGACaCACCAgcCCUGCgCGCg -3'
miRNA:   3'- -CCCCGG-----------CUUG-GUGGUguGGACG-GCGg -5'
11424 5' -60.7 NC_003085.1 + 11061 0.72 0.183773
Target:  5'- cGGGCUacACCACCAaccucgGCCUGCacCGCCa -3'
miRNA:   3'- cCCCGGcuUGGUGGUg-----UGGACG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 11223 0.69 0.262317
Target:  5'- aGGuGGCC--ACCGCCG-ACgUGCUGCCg -3'
miRNA:   3'- -CC-CCGGcuUGGUGGUgUGgACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11256 0.74 0.120082
Target:  5'- --uGCaCGAGCCACCGcCGCCcgaguUGCCGCCa -3'
miRNA:   3'- cccCG-GCUUGGUGGU-GUGG-----ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11378 0.66 0.409415
Target:  5'- cGGcGCCGGA-CACCuGCG-CUGCCGUCu -3'
miRNA:   3'- cCC-CGGCUUgGUGG-UGUgGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11389 0.66 0.4267
Target:  5'- uGGGUgGAgcgcuACCGCCggcugacGCACC-GCCGCg -3'
miRNA:   3'- cCCCGgCU-----UGGUGG-------UGUGGaCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.