miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 382 0.66 0.408517
Target:  5'- aGGGGCCaguACCuCUacggcaaGCGCCUGCgcucccuggaCGCCa -3'
miRNA:   3'- -CCCCGGcu-UGGuGG-------UGUGGACG----------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 461 0.67 0.383031
Target:  5'- aGGGCC-AGCCGgCGCugUUGCagguGCCc -3'
miRNA:   3'- cCCCGGcUUGGUgGUGugGACGg---CGG- -5'
11424 5' -60.7 NC_003085.1 + 515 0.7 0.237422
Target:  5'- cGGGCCGGACCGgaUGCGCgCUGCCcUCg -3'
miRNA:   3'- cCCCGGCUUGGUg-GUGUG-GACGGcGG- -5'
11424 5' -60.7 NC_003085.1 + 706 0.66 0.400495
Target:  5'- cGGGCgCGGccugagcagguCCAcCCGCGCCUcaGUCGCCu -3'
miRNA:   3'- cCCCG-GCUu----------GGU-GGUGUGGA--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 707 0.67 0.357801
Target:  5'- cGGGGCaacuCCGCgugGCGCCUGaCgCGCCg -3'
miRNA:   3'- -CCCCGgcuuGGUGg--UGUGGAC-G-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 761 0.68 0.310923
Target:  5'- uGGuGGgCGAGuCCGCCACGCCgcgcaacgGUgCGCCc -3'
miRNA:   3'- -CC-CCgGCUU-GGUGGUGUGGa-------CG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 1048 0.67 0.349654
Target:  5'- aGGcGCCGAACUGCC-CGCgUGgcuCCGCUg -3'
miRNA:   3'- cCC-CGGCUUGGUGGuGUGgAC---GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 1173 0.66 0.436903
Target:  5'- aGGGCgGAGcCCACgCGCuGCuCUGCgCGUCg -3'
miRNA:   3'- cCCCGgCUU-GGUG-GUG-UG-GACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 1261 0.69 0.282352
Target:  5'- aGGuGGCCGAauccaagguggGCCACCu--CgUGCgCGCCg -3'
miRNA:   3'- -CC-CCGGCU-----------UGGUGGuguGgACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 1507 0.75 0.104816
Target:  5'- -cGGCCGGugCGCCuCACg-GCCGCCa -3'
miRNA:   3'- ccCCGGCUugGUGGuGUGgaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 1686 0.7 0.231516
Target:  5'- -uGGCCGAAgCACaaguCGCCUGCgagCGCCu -3'
miRNA:   3'- ccCCGGCUUgGUGgu--GUGGACG---GCGG- -5'
11424 5' -60.7 NC_003085.1 + 2070 0.67 0.373644
Target:  5'- -aGGCCcggacgguGAcgcgacgagcgcaGCCGCCGCACCUcGgCGCCa -3'
miRNA:   3'- ccCCGG--------CU-------------UGGUGGUGUGGA-CgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 2307 0.69 0.289294
Target:  5'- cGGcGCUGGcCUGCCucgcCACCgGCCGCCg -3'
miRNA:   3'- cCC-CGGCUuGGUGGu---GUGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 2543 0.76 0.088907
Target:  5'- --cGCCGAACCugUGcCGCCUGCCGCg -3'
miRNA:   3'- cccCGGCUUGGugGU-GUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 3101 0.68 0.34164
Target:  5'- -aGGCCG-ACgGCgGaugaACUUGCCGCCa -3'
miRNA:   3'- ccCCGGCuUGgUGgUg---UGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3243 0.72 0.174418
Target:  5'- uGGGCCGGcCCA-CACACUcGCcCGCCa -3'
miRNA:   3'- cCCCGGCUuGGUgGUGUGGaCG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 3411 0.66 0.436903
Target:  5'- aGGGCgGGugCAgccguaUCGCGCCUGCUGg- -3'
miRNA:   3'- cCCCGgCUugGU------GGUGUGGACGGCgg -5'
11424 5' -60.7 NC_003085.1 + 3481 0.71 0.209119
Target:  5'- uGGGGa-GAGgCG-CGCAUCUGCCGCCc -3'
miRNA:   3'- -CCCCggCUUgGUgGUGUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3565 0.77 0.07743
Target:  5'- aGGcGGCCGGGCgGCaagCGCGCCUcGCUGCCg -3'
miRNA:   3'- -CC-CCGGCUUGgUG---GUGUGGA-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3965 0.67 0.383031
Target:  5'- cGGGGaUgGAGCCagacgGCCGCGCUUGCgaGCg -3'
miRNA:   3'- -CCCC-GgCUUGG-----UGGUGUGGACGg-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.