miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 49359 0.69 0.289294
Target:  5'- gGGGGCCc-GCCGCC-CGuCC-GCCGUCc -3'
miRNA:   3'- -CCCCGGcuUGGUGGuGU-GGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 49168 0.75 0.113742
Target:  5'- -aGGUCGGagGCCGcCCGguCCUGCCGCCg -3'
miRNA:   3'- ccCCGGCU--UGGU-GGUguGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 48897 0.79 0.050489
Target:  5'- gGGGGCCGcccugcacuucgacGGCCACCcCGCCcugGCUGCCg -3'
miRNA:   3'- -CCCCGGC--------------UUGGUGGuGUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 47591 0.71 0.193569
Target:  5'- uGGGCCGAugagcGCaagacggaGCCGCGCCUGUuucuuagaCGCCu -3'
miRNA:   3'- cCCCGGCU-----UGg-------UGGUGUGGACG--------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 47432 0.67 0.37449
Target:  5'- cGGGCacuuggugGAACaCAUCGCGCCacGCCGCa -3'
miRNA:   3'- cCCCGg-------CUUG-GUGGUGUGGa-CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 47149 0.7 0.243455
Target:  5'- cGGcGGCCGGuggcgaggcagGCCAgCGC-CgUGCUGCCg -3'
miRNA:   3'- -CC-CCGGCU-----------UGGUgGUGuGgACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 47063 0.69 0.295656
Target:  5'- aGGcGCCGAACC-CCAaagggagUACCUGCgagagcucgcgCGCCg -3'
miRNA:   3'- cCC-CGGCUUGGuGGU-------GUGGACG-----------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 46975 0.66 0.436903
Target:  5'- -cGGCUGAAgCGCCGCGCUgaugGCCa-- -3'
miRNA:   3'- ccCCGGCUUgGUGGUGUGGa---CGGcgg -5'
11424 5' -60.7 NC_003085.1 + 46949 0.73 0.156974
Target:  5'- aGGGGCCGAcGCgGgCACACC-GuCCGUCa -3'
miRNA:   3'- -CCCCGGCU-UGgUgGUGUGGaC-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 46664 0.68 0.318401
Target:  5'- --uGCCGAGgCGCUuCGCC-GCCGCCu -3'
miRNA:   3'- cccCGGCUUgGUGGuGUGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 46354 0.67 0.357801
Target:  5'- -aGGUCGAGCaucgccucaaGCCGCGCCUuCCGCg -3'
miRNA:   3'- ccCCGGCUUGg---------UGGUGUGGAcGGCGg -5'
11424 5' -60.7 NC_003085.1 + 46232 0.66 0.446299
Target:  5'- uGGGCCGGcCCAgguaGCGCCgGCauCGCCu -3'
miRNA:   3'- cCCCGGCUuGGUgg--UGUGGaCG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 45852 0.68 0.326013
Target:  5'- --uGUCGGACCggGCaAUACCUGCUGCCa -3'
miRNA:   3'- cccCGGCUUGG--UGgUGUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 45427 0.68 0.306501
Target:  5'- uGGGGCgCGGuggcgucgucacggcACCACCAacUCUGCCuuggGCCa -3'
miRNA:   3'- -CCCCG-GCU---------------UGGUGGUguGGACGG----CGG- -5'
11424 5' -60.7 NC_003085.1 + 44283 0.69 0.289294
Target:  5'- cGGcGCCGcccuGCCuuCCGCGCCaggaugGCCGCUg -3'
miRNA:   3'- cCC-CGGCu---UGGu-GGUGUGGa-----CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 43973 0.69 0.268864
Target:  5'- -cGGCCcGGCC-CCACGCCgcguUGuCCGCCu -3'
miRNA:   3'- ccCCGGcUUGGuGGUGUGG----AC-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 43510 0.66 0.446299
Target:  5'- aGGGGU-GGACUG--GCAUCUGCCGCg -3'
miRNA:   3'- -CCCCGgCUUGGUggUGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 43225 0.66 0.418458
Target:  5'- aGGcGUCG-ACCAUgucggaGCGCCUGCCGUg -3'
miRNA:   3'- cCC-CGGCuUGGUGg-----UGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 42509 0.67 0.348847
Target:  5'- aGGGcaucgcuGCCGAAguCgACCGC-CCaGCCGCCc -3'
miRNA:   3'- -CCC-------CGGCUU--GgUGGUGuGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 42121 0.67 0.349654
Target:  5'- aGGGGCgCGuguAgC-CCGCGuCCUcaGCCGCCu -3'
miRNA:   3'- -CCCCG-GCu--UgGuGGUGU-GGA--CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.