miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 11555 0.7 0.231516
Target:  5'- cGGGGCC-AugCGCCAacgcaccguCCUGCCcgcGCCu -3'
miRNA:   3'- -CCCCGGcUugGUGGUgu-------GGACGG---CGG- -5'
11424 5' -60.7 NC_003085.1 + 11061 0.72 0.183773
Target:  5'- cGGGCUacACCACCAaccucgGCCUGCacCGCCa -3'
miRNA:   3'- cCCCGGcuUGGUGGUg-----UGGACG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 32839 0.71 0.188615
Target:  5'- uGGGGcCCGAgagGCCG-CGCGCCgcggGaCCGCCc -3'
miRNA:   3'- -CCCC-GGCU---UGGUgGUGUGGa---C-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 23339 0.71 0.193569
Target:  5'- -uGGCCG-GCCAa-GCGCCgccgGCCGCCg -3'
miRNA:   3'- ccCCGGCuUGGUggUGUGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 47591 0.71 0.193569
Target:  5'- uGGGCCGAugagcGCaagacggaGCCGCGCCUGUuucuuagaCGCCu -3'
miRNA:   3'- cCCCGGCU-----UGg-------UGGUGUGGACG--------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 24373 0.71 0.198125
Target:  5'- uGGcGGCCGGGCCAUCAaugGCCUggacgggGCCGUg -3'
miRNA:   3'- -CC-CCGGCUUGGUGGUg--UGGA-------CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 12742 0.71 0.214536
Target:  5'- aGGGGCCGGAgguggugcgugUCgaggugGCCugGggugaugccCCUGCCGCCg -3'
miRNA:   3'- -CCCCGGCUU-----------GG------UGGugU---------GGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 14352 0.71 0.214536
Target:  5'- aGGGGCCGGACCugC-CACUcaacggggUGaCGUCg -3'
miRNA:   3'- -CCCCGGCUUGGugGuGUGG--------ACgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 15188 0.71 0.214536
Target:  5'- -cGGCUGAGCCGgUGCGCCagcGCCGCg -3'
miRNA:   3'- ccCCGGCUUGGUgGUGUGGa--CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 3243 0.72 0.174418
Target:  5'- uGGGCCGGcCCA-CACACUcGCcCGCCa -3'
miRNA:   3'- cCCCGGCUuGGUgGUGUGGaCG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 46949 0.73 0.156974
Target:  5'- aGGGGCCGAcGCgGgCACACC-GuCCGUCa -3'
miRNA:   3'- -CCCCGGCU-UGgUgGUGUGGaC-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 20015 0.74 0.133758
Target:  5'- uGGGGCCGcAACUcaGCCugGaggacggcaUUGCCGCCg -3'
miRNA:   3'- -CCCCGGC-UUGG--UGGugUg--------GACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 39947 0.79 0.056971
Target:  5'- aGGGaGCCGAugacCCGCCGCGC--GCCGCCa -3'
miRNA:   3'- -CCC-CGGCUu---GGUGGUGUGgaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3565 0.77 0.07743
Target:  5'- aGGcGGCCGGGCgGCaagCGCGCCUcGCUGCCg -3'
miRNA:   3'- -CC-CCGGCUUGgUG---GUGUGGA-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 6706 0.76 0.088907
Target:  5'- -cGGCCGcccugCACCGCACCcaUGCCGCCg -3'
miRNA:   3'- ccCCGGCuug--GUGGUGUGG--ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 1507 0.75 0.104816
Target:  5'- -cGGCCGGugCGCCuCACg-GCCGCCa -3'
miRNA:   3'- ccCCGGCUugGUGGuGUGgaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 23223 0.75 0.107716
Target:  5'- cGGGCUGcuccagacGGCCGCCGCGCUUcgcaccgcGCCGCCc -3'
miRNA:   3'- cCCCGGC--------UUGGUGGUGUGGA--------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 49168 0.75 0.113742
Target:  5'- -aGGUCGGagGCCGcCCGguCCUGCCGCCg -3'
miRNA:   3'- ccCCGGCU--UGGU-GGUguGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 40400 0.74 0.126408
Target:  5'- -uGGCCGGcauccaacuccucACCACCuucggaggcgcGCuGCCUGCCGCCg -3'
miRNA:   3'- ccCCGGCU-------------UGGUGG-----------UG-UGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 41469 0.74 0.126749
Target:  5'- uGGGGCgCGggUgaagUACCGCGCCagcGCUGCCu -3'
miRNA:   3'- -CCCCG-GCuuG----GUGGUGUGGa--CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.