miRNA display CGI


Results 1 - 20 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 46232 0.66 0.446299
Target:  5'- uGGGCCGGcCCAgguaGCGCCgGCauCGCCu -3'
miRNA:   3'- cCCCGGCUuGGUgg--UGUGGaCG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 27859 0.66 0.400495
Target:  5'- cGGGUCGcuCgCGCCACGCaugaUGUCgGCCa -3'
miRNA:   3'- cCCCGGCuuG-GUGGUGUGg---ACGG-CGG- -5'
11424 5' -60.7 NC_003085.1 + 21990 0.66 0.399609
Target:  5'- -aGGCCGAcgaggugGCCucCCGCACgaaaCUGCgCGCCc -3'
miRNA:   3'- ccCCGGCU-------UGGu-GGUGUG----GACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 40400 1.12 0.000182
Target:  5'- uGGGGCCGAACCACCACACCUGCCGCCc -3'
miRNA:   3'- -CCCCGGCUUGGUGGUGUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 21768 0.66 0.443468
Target:  5'- cGGGCgGAcgcccagacgcgacAgCACCAgCACgUcGCCGCCg -3'
miRNA:   3'- cCCCGgCU--------------UgGUGGU-GUGgA-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 18524 0.66 0.443468
Target:  5'- cGGGUCugcGGCUGCCugucGCACCUucucguaugcgacgGCCGCCa -3'
miRNA:   3'- cCCCGGc--UUGGUGG----UGUGGA--------------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 35891 0.66 0.436903
Target:  5'- cGGuGCCcacguCCACgCGCGCCuUGCuCGCCu -3'
miRNA:   3'- cCC-CGGcuu--GGUG-GUGUGG-ACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 21339 0.66 0.435969
Target:  5'- -cGGCCGcAGCaACUGCACCUGCUucuggcgcgcgcuGCCc -3'
miRNA:   3'- ccCCGGC-UUGgUGGUGUGGACGG-------------CGG- -5'
11424 5' -60.7 NC_003085.1 + 24294 0.66 0.427621
Target:  5'- --cGCCaccGCCACCAgGCCacgGUCGCCg -3'
miRNA:   3'- cccCGGcu-UGGUGGUgUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11378 0.66 0.409415
Target:  5'- cGGcGCCGGA-CACCuGCG-CUGCCGUCu -3'
miRNA:   3'- cCC-CGGCUUgGUGG-UGUgGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 21152 0.66 0.418458
Target:  5'- --cGcCCGucCCACCgcGCACCUGCUGCg -3'
miRNA:   3'- cccC-GGCuuGGUGG--UGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 31625 0.66 0.427621
Target:  5'- cGGGCaccaGcACUGCCccagGgGCCUGCCGCa -3'
miRNA:   3'- cCCCGg---CuUGGUGG----UgUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 26507 0.66 0.446299
Target:  5'- uGGGCCGGcucguCCGgCuuCGCCgucGCCGUCg -3'
miRNA:   3'- cCCCGGCUu----GGUgGu-GUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 43225 0.66 0.418458
Target:  5'- aGGcGUCG-ACCAUgucggaGCGCCUGCCGUg -3'
miRNA:   3'- cCC-CGGCuUGGUGg-----UGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 43510 0.66 0.446299
Target:  5'- aGGGGU-GGACUG--GCAUCUGCCGCg -3'
miRNA:   3'- -CCCCGgCUUGGUggUGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 38728 0.66 0.427621
Target:  5'- -uGGCCGGACagcaACagcgucCGCUUGCCGUCa -3'
miRNA:   3'- ccCCGGCUUGg---UGgu----GUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 25806 0.66 0.409415
Target:  5'- uGGGCgGcguucGCCugCGCgGCCUGCuCGCg -3'
miRNA:   3'- cCCCGgCu----UGGugGUG-UGGACG-GCGg -5'
11424 5' -60.7 NC_003085.1 + 29423 0.66 0.400495
Target:  5'- aGGGCgCGGGCgGCgGCAa-UGCCGUCc -3'
miRNA:   3'- cCCCG-GCUUGgUGgUGUggACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 32904 0.66 0.446299
Target:  5'- -uGGCCGGG-CGCCACGCaguuggagucGCUGCCu -3'
miRNA:   3'- ccCCGGCUUgGUGGUGUGga--------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 46975 0.66 0.436903
Target:  5'- -cGGCUGAAgCGCCGCGCUgaugGCCa-- -3'
miRNA:   3'- ccCCGGCUUgGUGGUGUGGa---CGGcgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.