miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 40400 1.12 0.000182
Target:  5'- uGGGGCCGAACCACCACACCUGCCGCCc -3'
miRNA:   3'- -CCCCGGCUUGGUGGUGUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 20849 0.81 0.041795
Target:  5'- cGGcGCCGAGCuCGCCGCugCggUGCCGCCc -3'
miRNA:   3'- cCC-CGGCUUG-GUGGUGugG--ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 48897 0.79 0.050489
Target:  5'- gGGGGCCGcccugcacuucgacGGCCACCcCGCCcugGCUGCCg -3'
miRNA:   3'- -CCCCGGC--------------UUGGUGGuGUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 39947 0.79 0.056971
Target:  5'- aGGGaGCCGAugacCCGCCGCGC--GCCGCCa -3'
miRNA:   3'- -CCC-CGGCUu---GGUGGUGUGgaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 24006 0.78 0.065525
Target:  5'- cGGcGGCCG-ACCACCcagaaACCgGCCGCCg -3'
miRNA:   3'- -CC-CCGGCuUGGUGGug---UGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3565 0.77 0.07743
Target:  5'- aGGcGGCCGGGCgGCaagCGCGCCUcGCUGCCg -3'
miRNA:   3'- -CC-CCGGCUUGgUG---GUGUGGA-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 27971 0.77 0.08184
Target:  5'- aGGGGaaCCaguCCACCACGCCgcgcagGCCGCCc -3'
miRNA:   3'- -CCCC--GGcuuGGUGGUGUGGa-----CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 6706 0.76 0.088907
Target:  5'- -cGGCCGcccugCACCGCACCcaUGCCGCCg -3'
miRNA:   3'- ccCCGGCuug--GUGGUGUGG--ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 2543 0.76 0.088907
Target:  5'- --cGCCGAACCugUGcCGCCUGCCGCg -3'
miRNA:   3'- cccCGGCUUGGugGU-GUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 14155 0.76 0.09139
Target:  5'- ---aCCGAcaGCCGCCGCgACCUGCUGCCg -3'
miRNA:   3'- ccccGGCU--UGGUGGUG-UGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 17308 0.75 0.104816
Target:  5'- -uGGCCGAcgccguaacCCACCGCGCCaccaGCCGCCc -3'
miRNA:   3'- ccCCGGCUu--------GGUGGUGUGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 1507 0.75 0.104816
Target:  5'- -cGGCCGGugCGCCuCACg-GCCGCCa -3'
miRNA:   3'- ccCCGGCUugGUGGuGUGgaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 23223 0.75 0.107716
Target:  5'- cGGGCUGcuccagacGGCCGCCGCGCUUcgcaccgcGCCGCCc -3'
miRNA:   3'- cCCCGGC--------UUGGUGGUGUGGA--------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 49168 0.75 0.113742
Target:  5'- -aGGUCGGagGCCGcCCGguCCUGCCGCCg -3'
miRNA:   3'- ccCCGGCU--UGGU-GGUguGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11256 0.74 0.120082
Target:  5'- --uGCaCGAGCCACCGcCGCCcgaguUGCCGCCa -3'
miRNA:   3'- cccCG-GCUUGGUGGU-GUGG-----ACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 40400 0.74 0.126408
Target:  5'- -uGGCCGGcauccaacuccucACCACCuucggaggcgcGCuGCCUGCCGCCg -3'
miRNA:   3'- ccCCGGCU-------------UGGUGG-----------UG-UGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 41469 0.74 0.126749
Target:  5'- uGGGGCgCGggUgaagUACCGCGCCagcGCUGCCu -3'
miRNA:   3'- -CCCCG-GCuuG----GUGGUGUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 20015 0.74 0.133758
Target:  5'- uGGGGCCGcAACUcaGCCugGaggacggcaUUGCCGCCg -3'
miRNA:   3'- -CCCCGGC-UUGG--UGGugUg--------GACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 19217 0.74 0.133758
Target:  5'- gGGGGCUGGG-CGCCGCgcaagGCCUG-CGCCa -3'
miRNA:   3'- -CCCCGGCUUgGUGGUG-----UGGACgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 28505 0.73 0.144942
Target:  5'- -aGGCC-AGCCACCGCACCUcgUGCCa -3'
miRNA:   3'- ccCCGGcUUGGUGGUGUGGAcgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.