miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 9772 0.73 0.152866
Target:  5'- cGGcGGagagaCGAGCCuCCAgCGCCUGCUGCUg -3'
miRNA:   3'- -CC-CCg----GCUUGGuGGU-GUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 46949 0.73 0.156974
Target:  5'- aGGGGCCGAcGCgGgCACACC-GuCCGUCa -3'
miRNA:   3'- -CCCCGGCU-UGgUgGUGUGGaC-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12241 0.72 0.169902
Target:  5'- cGGcGGCUGGGCCGCCAgaAUUgaagGCCGCUg -3'
miRNA:   3'- -CC-CCGGCUUGGUGGUg-UGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3243 0.72 0.174418
Target:  5'- uGGGCCGGcCCA-CACACUcGCcCGCCa -3'
miRNA:   3'- cCCCGGCUuGGUgGUGUGGaCG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 24161 0.72 0.183773
Target:  5'- cGGcGUCGu-CCACCugGCCgGCCGUCg -3'
miRNA:   3'- cCC-CGGCuuGGUGGugUGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11061 0.72 0.183773
Target:  5'- cGGGCUacACCACCAaccucgGCCUGCacCGCCa -3'
miRNA:   3'- cCCCGGcuUGGUGGUg-----UGGACG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 26094 0.71 0.188615
Target:  5'- uGGGGUCGAaguGCUgggGCUGCGCCUcgGCgGCCg -3'
miRNA:   3'- -CCCCGGCU---UGG---UGGUGUGGA--CGgCGG- -5'
11424 5' -60.7 NC_003085.1 + 32839 0.71 0.188615
Target:  5'- uGGGGcCCGAgagGCCG-CGCGCCgcggGaCCGCCc -3'
miRNA:   3'- -CCCC-GGCU---UGGUgGUGUGGa---C-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 33932 0.71 0.188615
Target:  5'- uGGGCUcAACCGCCuGCGCCaGUCGCUu -3'
miRNA:   3'- cCCCGGcUUGGUGG-UGUGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12598 0.71 0.193569
Target:  5'- uGGuGCCGGA-CACCACcgGgUUGCCGCCa -3'
miRNA:   3'- cCC-CGGCUUgGUGGUG--UgGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 23339 0.71 0.193569
Target:  5'- -uGGCCG-GCCAa-GCGCCgccgGCCGCCg -3'
miRNA:   3'- ccCCGGCuUGGUggUGUGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 47591 0.71 0.193569
Target:  5'- uGGGCCGAugagcGCaagacggaGCCGCGCCUGUuucuuagaCGCCu -3'
miRNA:   3'- cCCCGGCU-----UGg-------UGGUGUGGACG--------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 24962 0.71 0.195077
Target:  5'- cGGGCUGGaugguguugauggugGCCACCGCcgccauguccuccACCUGCgagCGCCa -3'
miRNA:   3'- cCCCGGCU---------------UGGUGGUG-------------UGGACG---GCGG- -5'
11424 5' -60.7 NC_003085.1 + 24373 0.71 0.198125
Target:  5'- uGGcGGCCGGGCCAUCAaugGCCUggacgggGCCGUg -3'
miRNA:   3'- -CC-CCGGCUUGGUGGUg--UGGA-------CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 19717 0.71 0.203819
Target:  5'- uGGGGCgCGAcgGCgGCCACGuCCUGggcgacgaCGCCg -3'
miRNA:   3'- -CCCCG-GCU--UGgUGGUGU-GGACg-------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 3481 0.71 0.209119
Target:  5'- uGGGGa-GAGgCG-CGCAUCUGCCGCCc -3'
miRNA:   3'- -CCCCggCUUgGUgGUGUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 14352 0.71 0.214536
Target:  5'- aGGGGCCGGACCugC-CACUcaacggggUGaCGUCg -3'
miRNA:   3'- -CCCCGGCUUGGugGuGUGG--------ACgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12742 0.71 0.214536
Target:  5'- aGGGGCCGGAgguggugcgugUCgaggugGCCugGggugaugccCCUGCCGCCg -3'
miRNA:   3'- -CCCCGGCUU-----------GG------UGGugU---------GGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 15188 0.71 0.214536
Target:  5'- -cGGCUGAGCCGgUGCGCCagcGCCGCg -3'
miRNA:   3'- ccCCGGCUUGGUgGUGUGGa--CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 16885 0.71 0.220074
Target:  5'- cGGGGCa-AGCCcCCuCGCCU-CCGCCa -3'
miRNA:   3'- -CCCCGgcUUGGuGGuGUGGAcGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.