miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 36739 0.66 0.427621
Target:  5'- cGGGGUaugcGCUACCuCcCCUcgGCCGCCg -3'
miRNA:   3'- -CCCCGgcu-UGGUGGuGuGGA--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 6744 0.66 0.427621
Target:  5'- -uGGUCcGACUGCCcgGCCUGCCGCg -3'
miRNA:   3'- ccCCGGcUUGGUGGugUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 31625 0.66 0.427621
Target:  5'- cGGGCaccaGcACUGCCccagGgGCCUGCCGCa -3'
miRNA:   3'- cCCCGg---CuUGGUGG----UgUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 24294 0.66 0.427621
Target:  5'- --cGCCaccGCCACCAgGCCacgGUCGCCg -3'
miRNA:   3'- cccCGGcu-UGGUGGUgUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 38728 0.66 0.427621
Target:  5'- -uGGCCGGACagcaACagcgucCGCUUGCCGUCa -3'
miRNA:   3'- ccCCGGCUUGg---UGgu----GUGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11389 0.66 0.4267
Target:  5'- uGGGUgGAgcgcuACCGCCggcugacGCACC-GCCGCg -3'
miRNA:   3'- cCCCGgCU-----UGGUGG-------UGUGGaCGGCGg -5'
11424 5' -60.7 NC_003085.1 + 30101 0.66 0.418458
Target:  5'- aGGacGCCG-GCCGCCuccucuacacggACGCCauccGCCGCCg -3'
miRNA:   3'- cCC--CGGCuUGGUGG------------UGUGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 28069 0.66 0.418458
Target:  5'- aGGcGGCCGAuggugaguCCGCUGgACUUGUCGUa -3'
miRNA:   3'- -CC-CCGGCUu-------GGUGGUgUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 43225 0.66 0.418458
Target:  5'- aGGcGUCG-ACCAUgucggaGCGCCUGCCGUg -3'
miRNA:   3'- cCC-CGGCuUGGUGg-----UGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 21152 0.66 0.418458
Target:  5'- --cGcCCGucCCACCgcGCACCUGCUGCg -3'
miRNA:   3'- cccC-GGCuuGGUGG--UGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 11378 0.66 0.409415
Target:  5'- cGGcGCCGGA-CACCuGCG-CUGCCGUCu -3'
miRNA:   3'- cCC-CGGCUUgGUGG-UGUgGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 25806 0.66 0.409415
Target:  5'- uGGGCgGcguucGCCugCGCgGCCUGCuCGCg -3'
miRNA:   3'- cCCCGgCu----UGGugGUG-UGGACG-GCGg -5'
11424 5' -60.7 NC_003085.1 + 40707 0.66 0.409415
Target:  5'- cGGGuGCUGGACgCGCCGguggACCUcUCGCCg -3'
miRNA:   3'- -CCC-CGGCUUG-GUGGUg---UGGAcGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 382 0.66 0.408517
Target:  5'- aGGGGCCaguACCuCUacggcaaGCGCCUGCgcucccuggaCGCCa -3'
miRNA:   3'- -CCCCGGcu-UGGuGG-------UGUGGACG----------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 27859 0.66 0.400495
Target:  5'- cGGGUCGcuCgCGCCACGCaugaUGUCgGCCa -3'
miRNA:   3'- cCCCGGCuuG-GUGGUGUGg---ACGG-CGG- -5'
11424 5' -60.7 NC_003085.1 + 38124 0.66 0.400495
Target:  5'- aGGuGCCGugagGCuCGCCGC-CCUGCUGgCg -3'
miRNA:   3'- cCC-CGGCu---UG-GUGGUGuGGACGGCgG- -5'
11424 5' -60.7 NC_003085.1 + 706 0.66 0.400495
Target:  5'- cGGGCgCGGccugagcagguCCAcCCGCGCCUcaGUCGCCu -3'
miRNA:   3'- cCCCG-GCUu----------GGU-GGUGUGGA--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 29423 0.66 0.400495
Target:  5'- aGGGCgCGGGCgGCgGCAa-UGCCGUCc -3'
miRNA:   3'- cCCCG-GCUUGgUGgUGUggACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 21990 0.66 0.399609
Target:  5'- -aGGCCGAcgaggugGCCucCCGCACgaaaCUGCgCGCCc -3'
miRNA:   3'- ccCCGGCU-------UGGu-GGUGUG----GACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 12012 0.67 0.391699
Target:  5'- -cGGCCuGAcGCUGgCGCACCUGCCGgUg -3'
miRNA:   3'- ccCCGG-CU-UGGUgGUGUGGACGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.