miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 15035 0.67 0.391699
Target:  5'- uGGGCCGGcCCaaGCCGCAgCCcaggGCCaaaGCCu -3'
miRNA:   3'- cCCCGGCUuGG--UGGUGU-GGa---CGG---CGG- -5'
11424 5' -60.7 NC_003085.1 + 12012 0.67 0.391699
Target:  5'- -cGGCCuGAcGCUGgCGCACCUGCCGgUg -3'
miRNA:   3'- ccCCGG-CU-UGGUgGUGUGGACGGCgG- -5'
11424 5' -60.7 NC_003085.1 + 25573 0.67 0.386483
Target:  5'- cGGGCgCGGACCGCCuuuucgugcaguuugGCA--UGCaCGCCa -3'
miRNA:   3'- cCCCG-GCUUGGUGG---------------UGUggACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 461 0.67 0.383031
Target:  5'- aGGGCC-AGCCGgCGCugUUGCagguGCCc -3'
miRNA:   3'- cCCCGGcUUGGUgGUGugGACGg---CGG- -5'
11424 5' -60.7 NC_003085.1 + 10670 0.67 0.383031
Target:  5'- cGGGGCUgccggcgugcuGGACaCACCAgcCCUGCgCGCg -3'
miRNA:   3'- -CCCCGG-----------CUUG-GUGGUguGGACG-GCGg -5'
11424 5' -60.7 NC_003085.1 + 3965 0.67 0.383031
Target:  5'- cGGGGaUgGAGCCagacgGCCGCGCUUGCgaGCg -3'
miRNA:   3'- -CCCC-GgCUUGG-----UGGUGUGGACGg-CGg -5'
11424 5' -60.7 NC_003085.1 + 37673 0.67 0.383031
Target:  5'- uGGGGCa--GCCGaCACGCCcggagcgcggcGCCGCCg -3'
miRNA:   3'- -CCCCGgcuUGGUgGUGUGGa----------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 4031 0.67 0.383031
Target:  5'- uGGuGCCGugacgacGCCACCGCGCCccaUGCuuuCGCUg -3'
miRNA:   3'- cCC-CGGCu------UGGUGGUGUGG---ACG---GCGG- -5'
11424 5' -60.7 NC_003085.1 + 47432 0.67 0.37449
Target:  5'- cGGGCacuuggugGAACaCAUCGCGCCacGCCGCa -3'
miRNA:   3'- cCCCGg-------CUUG-GUGGUGUGGa-CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 41362 0.67 0.37449
Target:  5'- -aGGCCGGGCCGCguCACCca-CGUCa -3'
miRNA:   3'- ccCCGGCUUGGUGguGUGGacgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 40485 0.67 0.37449
Target:  5'- cGGGCCGGugaaguCCGCgAgGCC-GCgGCCc -3'
miRNA:   3'- cCCCGGCUu-----GGUGgUgUGGaCGgCGG- -5'
11424 5' -60.7 NC_003085.1 + 2070 0.67 0.373644
Target:  5'- -aGGCCcggacgguGAcgcgacgagcgcaGCCGCCGCACCUcGgCGCCa -3'
miRNA:   3'- ccCCGG--------CU-------------UGGUGGUGUGGA-CgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 39807 0.67 0.369429
Target:  5'- uGGcGGCCGucccaaucuucacagGGCCACCAgACU--CCGCCc -3'
miRNA:   3'- -CC-CCGGC---------------UUGGUGGUgUGGacGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 10488 0.67 0.366915
Target:  5'- cGGGGCCGucUCACCGacgauggcuCCguugaggacgacccaGCCGCCa -3'
miRNA:   3'- -CCCCGGCuuGGUGGUgu-------GGa--------------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 41641 0.67 0.36608
Target:  5'- -aGGCUuGGCCGCCGCucACCUGgUGCUg -3'
miRNA:   3'- ccCCGGcUUGGUGGUG--UGGACgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 12392 0.67 0.357801
Target:  5'- aGGGCCGGguGCUGCUGCucgacCCggcgggGCCGCUg -3'
miRNA:   3'- cCCCGGCU--UGGUGGUGu----GGa-----CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 35228 0.67 0.357801
Target:  5'- aGGGGCUGuAACCggGCCcCugCUuCCGCUu -3'
miRNA:   3'- -CCCCGGC-UUGG--UGGuGugGAcGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 46354 0.67 0.357801
Target:  5'- -aGGUCGAGCaucgccucaaGCCGCGCCUuCCGCg -3'
miRNA:   3'- ccCCGGCUUGg---------UGGUGUGGAcGGCGg -5'
11424 5' -60.7 NC_003085.1 + 707 0.67 0.357801
Target:  5'- cGGGGCaacuCCGCgugGCGCCUGaCgCGCCg -3'
miRNA:   3'- -CCCCGgcuuGGUGg--UGUGGAC-G-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 21215 0.67 0.357801
Target:  5'- -aGGUgGAGCCGucCCAagUACCgcUGCCGCCa -3'
miRNA:   3'- ccCCGgCUUGGU--GGU--GUGG--ACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.