miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 31969 0.66 0.436903
Target:  5'- cGGGCUGGcgACUGCCcccguuACGCCUggggcuggcGCUGCCu -3'
miRNA:   3'- cCCCGGCU--UGGUGG------UGUGGA---------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 38124 0.66 0.400495
Target:  5'- aGGuGCCGugagGCuCGCCGC-CCUGCUGgCg -3'
miRNA:   3'- cCC-CGGCu---UG-GUGGUGuGGACGGCgG- -5'
11424 5' -60.7 NC_003085.1 + 35892 0.66 0.446299
Target:  5'- cGGGCCGcggaguCCcaggGCCAUGCCacgGCCaGCCc -3'
miRNA:   3'- cCCCGGCuu----GG----UGGUGUGGa--CGG-CGG- -5'
11424 5' -60.7 NC_003085.1 + 7333 0.66 0.436903
Target:  5'- aGGcGGCUGAggacgcggGCUACaCGCGCCccugGgCGCCg -3'
miRNA:   3'- -CC-CCGGCU--------UGGUG-GUGUGGa---CgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 17960 0.66 0.436903
Target:  5'- uGGGGCaccuGAAgCGCCggcaGCGCggGCCGCa -3'
miRNA:   3'- -CCCCGg---CUUgGUGG----UGUGgaCGGCGg -5'
11424 5' -60.7 NC_003085.1 + 11455 0.66 0.434106
Target:  5'- uGGGGCUGcACCGCCgggguccagacgaaACACggauaCUGCaCGCa -3'
miRNA:   3'- -CCCCGGCuUGGUGG--------------UGUG-----GACG-GCGg -5'
11424 5' -60.7 NC_003085.1 + 706 0.66 0.400495
Target:  5'- cGGGCgCGGccugagcagguCCAcCCGCGCCUcaGUCGCCu -3'
miRNA:   3'- cCCCG-GCUu----------GGU-GGUGUGGA--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 6744 0.66 0.427621
Target:  5'- -uGGUCcGACUGCCcgGCCUGCCGCg -3'
miRNA:   3'- ccCCGGcUUGGUGGugUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 46232 0.66 0.446299
Target:  5'- uGGGCCGGcCCAgguaGCGCCgGCauCGCCu -3'
miRNA:   3'- cCCCGGCUuGGUgg--UGUGGaCG--GCGG- -5'
11424 5' -60.7 NC_003085.1 + 40707 0.66 0.409415
Target:  5'- cGGGuGCUGGACgCGCCGguggACCUcUCGCCg -3'
miRNA:   3'- -CCC-CGGCUUG-GUGGUg---UGGAcGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 382 0.66 0.408517
Target:  5'- aGGGGCCaguACCuCUacggcaaGCGCCUGCgcucccuggaCGCCa -3'
miRNA:   3'- -CCCCGGcu-UGGuGG-------UGUGGACG----------GCGG- -5'
11424 5' -60.7 NC_003085.1 + 36739 0.66 0.427621
Target:  5'- cGGGGUaugcGCUACCuCcCCUcgGCCGCCg -3'
miRNA:   3'- -CCCCGgcu-UGGUGGuGuGGA--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 27636 0.66 0.427621
Target:  5'- gGGGGCUc-GCCGCCagcgggACGCCgcaUCGCCa -3'
miRNA:   3'- -CCCCGGcuUGGUGG------UGUGGac-GGCGG- -5'
11424 5' -60.7 NC_003085.1 + 30101 0.66 0.418458
Target:  5'- aGGacGCCG-GCCGCCuccucuacacggACGCCauccGCCGCCg -3'
miRNA:   3'- cCC--CGGCuUGGUGG------------UGUGGa---CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 1173 0.66 0.436903
Target:  5'- aGGGCgGAGcCCACgCGCuGCuCUGCgCGUCg -3'
miRNA:   3'- cCCCGgCUU-GGUG-GUG-UG-GACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 3411 0.66 0.436903
Target:  5'- aGGGCgGGugCAgccguaUCGCGCCUGCUGg- -3'
miRNA:   3'- cCCCGgCUugGU------GGUGUGGACGGCgg -5'
11424 5' -60.7 NC_003085.1 + 12546 0.66 0.446299
Target:  5'- aGGGau--GCCACC-CGCC-GCCGCUg -3'
miRNA:   3'- cCCCggcuUGGUGGuGUGGaCGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 20424 0.66 0.440647
Target:  5'- uGGGCCcaacgcuggcaggagGAGauguCCGCCGCGCgCgaGCCGCUg -3'
miRNA:   3'- cCCCGG---------------CUU----GGUGGUGUG-Ga-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 11389 0.66 0.4267
Target:  5'- uGGGUgGAgcgcuACCGCCggcugacGCACC-GCCGCg -3'
miRNA:   3'- cCCCGgCU-----UGGUGG-------UGUGGaCGGCGg -5'
11424 5' -60.7 NC_003085.1 + 5149 0.66 0.446299
Target:  5'- aGGaGGCCGAcgcgaaggcaGCgGCCAU-CCUGgCGCg -3'
miRNA:   3'- -CC-CCGGCU----------UGgUGGUGuGGACgGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.