Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11425 | 5' | -58.1 | NC_003085.1 | + | 40124 | 1.08 | 0.000471 |
Target: 5'- aCAGGCCGAUGAAGAAGAGGCGGGCCAu -3' miRNA: 3'- -GUCCGGCUACUUCUUCUCCGCCCGGU- -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 40484 | 0.76 | 0.121153 |
Target: 5'- cCGGGCCGGUGAAGuccgcGAGGCcGcGGCCc -3' miRNA: 3'- -GUCCGGCUACUUCuu---CUCCG-C-CCGGu -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 40849 | 0.68 | 0.380568 |
Target: 5'- cCGGGCUGGccaaccUGGAGGccagcguggacaaGGAGGUGGGCa- -3' miRNA: 3'- -GUCCGGCU------ACUUCU-------------UCUCCGCCCGgu -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 43827 | 0.67 | 0.446803 |
Target: 5'- --aGCCGGUGuuGAGGucgcgcAGGCGGGCg- -3' miRNA: 3'- gucCGGCUACuuCUUC------UCCGCCCGgu -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 47152 | 0.71 | 0.257654 |
Target: 5'- -cGGCCGGUGGc---GAGGCaGGCCAg -3' miRNA: 3'- guCCGGCUACUucuuCUCCGcCCGGU- -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 47360 | 0.66 | 0.517923 |
Target: 5'- gGGcGCCGAUGgcGccGAGGUGcGGCg- -3' miRNA: 3'- gUC-CGGCUACuuCuuCUCCGC-CCGgu -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 48345 | 0.66 | 0.528466 |
Target: 5'- -cGGCCGAUGGAcaucGGGaCGGGCUc -3' miRNA: 3'- guCCGGCUACUUcuucUCC-GCCCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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