miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11425 5' -58.1 NC_003085.1 + 118 0.66 0.497097
Target:  5'- gCGGGCCcccaauGUGggGAGaGGGCGGGaCGg -3'
miRNA:   3'- -GUCCGGc-----UACuuCUUcUCCGCCCgGU- -5'
11425 5' -58.1 NC_003085.1 + 27753 0.66 0.507465
Target:  5'- uCAGGCgcugGAUGuccGAGgcGAaGCGGGCCAc -3'
miRNA:   3'- -GUCCGg---CUAC---UUCuuCUcCGCCCGGU- -5'
11425 5' -58.1 NC_003085.1 + 32980 0.66 0.507465
Target:  5'- gCAGGCCGGguuugGAAGGAGAGa-GGuCCAu -3'
miRNA:   3'- -GUCCGGCUa----CUUCUUCUCcgCCcGGU- -5'
11425 5' -58.1 NC_003085.1 + 47360 0.66 0.517923
Target:  5'- gGGcGCCGAUGgcGccGAGGUGcGGCg- -3'
miRNA:   3'- gUC-CGGCUACuuCuuCUCCGC-CCGgu -5'
11425 5' -58.1 NC_003085.1 + 30747 0.66 0.518973
Target:  5'- aAGGCgCGucccgucucgucAGgcGGGGCGGGCCAc -3'
miRNA:   3'- gUCCG-GCuacu--------UCuuCUCCGCCCGGU- -5'
11425 5' -58.1 NC_003085.1 + 48345 0.66 0.528466
Target:  5'- -cGGCCGAUGGAcaucGGGaCGGGCUc -3'
miRNA:   3'- guCCGGCUACUUcuucUCC-GCCCGGu -5'
11425 5' -58.1 NC_003085.1 + 487 0.66 0.528466
Target:  5'- -cGGCCaucagcgcggaGAUGAAGgcGc-GCGGGCCGg -3'
miRNA:   3'- guCCGG-----------CUACUUCuuCucCGCCCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.