Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11425 | 5' | -58.1 | NC_003085.1 | + | 118 | 0.66 | 0.497097 |
Target: 5'- gCGGGCCcccaauGUGggGAGaGGGCGGGaCGg -3' miRNA: 3'- -GUCCGGc-----UACuuCUUcUCCGCCCgGU- -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 27753 | 0.66 | 0.507465 |
Target: 5'- uCAGGCgcugGAUGuccGAGgcGAaGCGGGCCAc -3' miRNA: 3'- -GUCCGg---CUAC---UUCuuCUcCGCCCGGU- -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 32980 | 0.66 | 0.507465 |
Target: 5'- gCAGGCCGGguuugGAAGGAGAGa-GGuCCAu -3' miRNA: 3'- -GUCCGGCUa----CUUCUUCUCcgCCcGGU- -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 47360 | 0.66 | 0.517923 |
Target: 5'- gGGcGCCGAUGgcGccGAGGUGcGGCg- -3' miRNA: 3'- gUC-CGGCUACuuCuuCUCCGC-CCGgu -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 30747 | 0.66 | 0.518973 |
Target: 5'- aAGGCgCGucccgucucgucAGgcGGGGCGGGCCAc -3' miRNA: 3'- gUCCG-GCuacu--------UCuuCUCCGCCCGGU- -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 48345 | 0.66 | 0.528466 |
Target: 5'- -cGGCCGAUGGAcaucGGGaCGGGCUc -3' miRNA: 3'- guCCGGCUACUUcuucUCC-GCCCGGu -5' |
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11425 | 5' | -58.1 | NC_003085.1 | + | 487 | 0.66 | 0.528466 |
Target: 5'- -cGGCCaucagcgcggaGAUGAAGgcGc-GCGGGCCGg -3' miRNA: 3'- guCCGG-----------CUACUUCuuCucCGCCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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