Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11427 | 3' | -59.2 | NC_003085.1 | + | 28956 | 0.74 | 0.137244 |
Target: 5'- cCGUGGGCCucccaaCAGUGGAcGCaggGGCCCa -3' miRNA: 3'- -GCAUCCGGca----GUCGCCUuCGa--CCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34180 | 0.66 | 0.502909 |
Target: 5'- aGUAGGCCag-GGCGGGAGUUucGCUCu -3' miRNA: 3'- gCAUCCGGcagUCGCCUUCGAc-CGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 32849 | 0.66 | 0.481708 |
Target: 5'- --gAGGCCGcgCGccGCGGGaccgcccGGgaGGCCCa -3' miRNA: 3'- gcaUCCGGCa-GU--CGCCU-------UCgaCCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 37532 | 0.66 | 0.472755 |
Target: 5'- uGgcGGCuCGUCAGCGGuaacGgUGGCa- -3' miRNA: 3'- gCauCCG-GCAGUCGCCuu--CgACCGgg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 40966 | 0.67 | 0.446416 |
Target: 5'- uGU-GGCCccgccagcgcucgcaAGCGGcaaGGGCUGGCCCa -3' miRNA: 3'- gCAuCCGGcag------------UCGCC---UUCGACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 608 | 0.67 | 0.406224 |
Target: 5'- -cUGGcGCCGUCcugGGCGcgcucGAGGCUGGCgCg -3' miRNA: 3'- gcAUC-CGGCAG---UCGC-----CUUCGACCGgG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34929 | 0.68 | 0.34589 |
Target: 5'- gGUgcAGGCgcaCG-CGGCGGAGuuGCUGGCCg -3' miRNA: 3'- gCA--UCCG---GCaGUCGCCUU--CGACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 18066 | 0.69 | 0.321301 |
Target: 5'- gGUAGacgccucggacaaGCgG-CAGUGGGAGUUGGCCUg -3' miRNA: 3'- gCAUC-------------CGgCaGUCGCCUUCGACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 40819 | 0.69 | 0.312895 |
Target: 5'- gCGUcccGGCCGgccuguaccugaCGGCGGccGGGCUGGCCa -3' miRNA: 3'- -GCAu--CCGGCa-----------GUCGCC--UUCGACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 14200 | 0.7 | 0.292974 |
Target: 5'- gCGUccGGGCUGcgacaagcccgcgcgCaAGCGGAAGCaggGGCCCg -3' miRNA: 3'- -GCA--UCCGGCa--------------G-UCGCCUUCGa--CCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 19061 | 0.7 | 0.292256 |
Target: 5'- ---cGGCgCG-CGGCGGAgcaGGCgccgGGCCCg -3' miRNA: 3'- gcauCCG-GCaGUCGCCU---UCGa---CCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 15058 | 0.7 | 0.292256 |
Target: 5'- --aGGGCCaaagccUC-GUGGGAGUUGGCCCu -3' miRNA: 3'- gcaUCCGGc-----AGuCGCCUUCGACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 3186 | 0.71 | 0.245347 |
Target: 5'- aGUA-GCCGUCcucucGCGGGccCUGGCCCg -3' miRNA: 3'- gCAUcCGGCAGu----CGCCUucGACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 22588 | 0.74 | 0.152958 |
Target: 5'- uGUGGGCCG-CGGCGGAgaaaaAGCgGGCg- -3' miRNA: 3'- gCAUCCGGCaGUCGCCU-----UCGaCCGgg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 4100 | 0.67 | 0.406224 |
Target: 5'- gGUGGGCCG--GGCGGuccAGGCUGccaGCCa -3' miRNA: 3'- gCAUCCGGCagUCGCC---UUCGAC---CGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34297 | 0.67 | 0.415368 |
Target: 5'- --cGGGCCGUCAGCGcaGAGGg-GGCa- -3' miRNA: 3'- gcaUCCGGCAGUCGC--CUUCgaCCGgg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 9218 | 0.66 | 0.453167 |
Target: 5'- aCGUAGGCCc-CGGCGGcgAAGa--GCCCg -3' miRNA: 3'- -GCAUCCGGcaGUCGCC--UUCgacCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 48779 | 0.66 | 0.453167 |
Target: 5'- cCG-AGGCCGgacGCGGGacAGgUGGCCg -3' miRNA: 3'- -GCaUCCGGCaguCGCCU--UCgACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 15116 | 0.66 | 0.492761 |
Target: 5'- cCGgAGGuCCGcaucaaCGGCGGguGCUGGCUg -3' miRNA: 3'- -GCaUCC-GGCa-----GUCGCCuuCGACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 39482 | 1.12 | 0.000226 |
Target: 5'- gCGUAGGCCGUCAGCGGAAGCUGGCCCg -3' miRNA: 3'- -GCAUCCGGCAGUCGCCUUCGACCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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