miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11427 3' -59.2 NC_003085.1 + 28605 0.72 0.215798
Target:  5'- gGUGGGCgGcaccgCAGCGGcGAGCUcGGCgCCg -3'
miRNA:   3'- gCAUCCGgCa----GUCGCC-UUCGA-CCG-GG- -5'
11427 3' -59.2 NC_003085.1 + 48993 0.74 0.141028
Target:  5'- cCGUGGGCaccugcaaCAGCGccGGCUGGCCCu -3'
miRNA:   3'- -GCAUCCGgca-----GUCGCcuUCGACCGGG- -5'
11427 3' -59.2 NC_003085.1 + 26653 0.76 0.101389
Target:  5'- aGUcgGGGCCGUCgccuccugGGCGGGAGC-GGCCg -3'
miRNA:   3'- gCA--UCCGGCAG--------UCGCCUUCGaCCGGg -5'
11427 3' -59.2 NC_003085.1 + 47955 0.68 0.362456
Target:  5'- uGgcGGCCGUgaggcgcacCGGCcGAGGCUGGCg- -3'
miRNA:   3'- gCauCCGGCA---------GUCGcCUUCGACCGgg -5'
11427 3' -59.2 NC_003085.1 + 11202 0.68 0.370944
Target:  5'- cCGUc-GUCGUCGcGCGGAAGUaggUGGCCa -3'
miRNA:   3'- -GCAucCGGCAGU-CGCCUUCG---ACCGGg -5'
11427 3' -59.2 NC_003085.1 + 47148 0.66 0.502909
Target:  5'- gCGgcGGCCGgUGGC-GAGGCaGGCCa -3'
miRNA:   3'- -GCauCCGGCaGUCGcCUUCGaCCGGg -5'
11427 3' -59.2 NC_003085.1 + 15116 0.66 0.492761
Target:  5'- cCGgAGGuCCGcaucaaCGGCGGguGCUGGCUg -3'
miRNA:   3'- -GCaUCC-GGCa-----GUCGCCuuCGACCGGg -5'
11427 3' -59.2 NC_003085.1 + 48779 0.66 0.453167
Target:  5'- cCG-AGGCCGgacGCGGGacAGgUGGCCg -3'
miRNA:   3'- -GCaUCCGGCaguCGCCU--UCgACCGGg -5'
11427 3' -59.2 NC_003085.1 + 9218 0.66 0.453167
Target:  5'- aCGUAGGCCc-CGGCGGcgAAGa--GCCCg -3'
miRNA:   3'- -GCAUCCGGcaGUCGCC--UUCgacCGGG- -5'
11427 3' -59.2 NC_003085.1 + 34297 0.67 0.415368
Target:  5'- --cGGGCCGUCAGCGcaGAGGg-GGCa- -3'
miRNA:   3'- gcaUCCGGCAGUCGC--CUUCgaCCGgg -5'
11427 3' -59.2 NC_003085.1 + 4100 0.67 0.406224
Target:  5'- gGUGGGCCG--GGCGGuccAGGCUGccaGCCa -3'
miRNA:   3'- gCAUCCGGCagUCGCC---UUCGAC---CGGg -5'
11427 3' -59.2 NC_003085.1 + 26120 0.67 0.397208
Target:  5'- uCGgcGGCCGgCGGCGcuuGGCcGGCCa -3'
miRNA:   3'- -GCauCCGGCaGUCGCcu-UCGaCCGGg -5'
11427 3' -59.2 NC_003085.1 + 45404 0.68 0.388321
Target:  5'- gCGgAGcGCCGUCAGCGaAAGCauggGGCgCg -3'
miRNA:   3'- -GCaUC-CGGCAGUCGCcUUCGa---CCGgG- -5'
11427 3' -59.2 NC_003085.1 + 29255 0.68 0.379566
Target:  5'- --aAGG-CGUCcGCGucguGGCUGGCCCa -3'
miRNA:   3'- gcaUCCgGCAGuCGCcu--UCGACCGGG- -5'
11427 3' -59.2 NC_003085.1 + 39482 1.12 0.000226
Target:  5'- gCGUAGGCCGUCAGCGGAAGCUGGCCCg -3'
miRNA:   3'- -GCAUCCGGCAGUCGCCUUCGACCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.