Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11427 | 3' | -59.2 | NC_003085.1 | + | 32474 | 0.69 | 0.299503 |
Target: 5'- uCGUc-GCCGUCGGCGuc-GCgGGCCCg -3' miRNA: 3'- -GCAucCGGCAGUCGCcuuCGaCCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 32849 | 0.66 | 0.481708 |
Target: 5'- --gAGGCCGcgCGccGCGGGaccgcccGGgaGGCCCa -3' miRNA: 3'- gcaUCCGGCa-GU--CGCCU-------UCgaCCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34180 | 0.66 | 0.502909 |
Target: 5'- aGUAGGCCag-GGCGGGAGUUucGCUCu -3' miRNA: 3'- gCAUCCGGcagUCGCCUUCGAc-CGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34297 | 0.67 | 0.415368 |
Target: 5'- --cGGGCCGUCAGCGcaGAGGg-GGCa- -3' miRNA: 3'- gcaUCCGGCAGUCGC--CUUCgaCCGgg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34439 | 0.7 | 0.285147 |
Target: 5'- -uUGGGCCGgccCAGCGGcAAGUccaguugcucUGGCUCa -3' miRNA: 3'- gcAUCCGGCa--GUCGCC-UUCG----------ACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 34929 | 0.68 | 0.34589 |
Target: 5'- gGUgcAGGCgcaCG-CGGCGGAGuuGCUGGCCg -3' miRNA: 3'- gCA--UCCG---GCaGUCGCCUU--CGACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 37532 | 0.66 | 0.472755 |
Target: 5'- uGgcGGCuCGUCAGCGGuaacGgUGGCa- -3' miRNA: 3'- gCauCCG-GCAGUCGCCuu--CgACCGgg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 39482 | 1.12 | 0.000226 |
Target: 5'- gCGUAGGCCGUCAGCGGAAGCUGGCCCg -3' miRNA: 3'- -GCAUCCGGCAGUCGCCUUCGACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 40819 | 0.69 | 0.312895 |
Target: 5'- gCGUcccGGCCGgccuguaccugaCGGCGGccGGGCUGGCCa -3' miRNA: 3'- -GCAu--CCGGCa-----------GUCGCC--UUCGACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 40966 | 0.67 | 0.446416 |
Target: 5'- uGU-GGCCccgccagcgcucgcaAGCGGcaaGGGCUGGCCCa -3' miRNA: 3'- gCAuCCGGcag------------UCGCC---UUCGACCGGG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 45404 | 0.68 | 0.388321 |
Target: 5'- gCGgAGcGCCGUCAGCGaAAGCauggGGCgCg -3' miRNA: 3'- -GCaUC-CGGCAGUCGCcUUCGa---CCGgG- -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 47148 | 0.66 | 0.502909 |
Target: 5'- gCGgcGGCCGgUGGC-GAGGCaGGCCa -3' miRNA: 3'- -GCauCCGGCaGUCGcCUUCGaCCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 47955 | 0.68 | 0.362456 |
Target: 5'- uGgcGGCCGUgaggcgcacCGGCcGAGGCUGGCg- -3' miRNA: 3'- gCauCCGGCA---------GUCGcCUUCGACCGgg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 48779 | 0.66 | 0.453167 |
Target: 5'- cCG-AGGCCGgacGCGGGacAGgUGGCCg -3' miRNA: 3'- -GCaUCCGGCaguCGCCU--UCgACCGGg -5' |
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11427 | 3' | -59.2 | NC_003085.1 | + | 48993 | 0.74 | 0.141028 |
Target: 5'- cCGUGGGCaccugcaaCAGCGccGGCUGGCCCu -3' miRNA: 3'- -GCAUCCGgca-----GUCGCcuUCGACCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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