Results 61 - 69 of 69 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11429 | 3' | -61.2 | NC_003085.1 | + | 30748 | 0.71 | 0.189414 |
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Target: 5'- aGgCGCGUCCCgucuCGUCagGCgGGGCg -3' miRNA: 3'- -CgGCGCAGGGguu-GCAGagCGgCCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 25402 | 0.71 | 0.189414 |
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Target: 5'- aGCCGCGgcUUCCC-GCGcUUCGCCaGGCg -3' miRNA: 3'- -CGGCGC--AGGGGuUGCaGAGCGGcCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 8134 | 0.73 | 0.141785 |
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Target: 5'- gGCCaaGUCCCCGggcuucgGCGUgUCGgUGGGCg -3' miRNA: 3'- -CGGcgCAGGGGU-------UGCAgAGCgGCCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 11785 | 0.73 | 0.138445 |
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Target: 5'- cGCCGCG-CUCCGGgcgUGUCggcugccccaUCGCCGGGUg -3' miRNA: 3'- -CGGCGCaGGGGUU---GCAG----------AGCGGCCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 19117 | 0.73 | 0.138445 |
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Target: 5'- cGCCGCagugcgCCCCGcgacaGCGUC-CGCCaGGGCc -3' miRNA: 3'- -CGGCGca----GGGGU-----UGCAGaGCGG-CCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 20068 | 0.75 | 0.100073 |
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Target: 5'- gGCCGCGcuggcgcagcaacUCCgCCAugGCGUUcUGCCGGGCg -3' miRNA: 3'- -CGGCGC-------------AGG-GGU--UGCAGaGCGGCCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 29524 | 0.77 | 0.076378 |
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Target: 5'- -gCGCGUCaCCAGCGUCUUGgCgCGGGCg -3' miRNA: 3'- cgGCGCAGgGGUUGCAGAGC-G-GCCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 20357 | 0.77 | 0.070327 |
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Target: 5'- cGCCGCGUCgCCGcUG-CUgaCGCCGGGCa -3' miRNA: 3'- -CGGCGCAGgGGUuGCaGA--GCGGCCCG- -5' |
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| 11429 | 3' | -61.2 | NC_003085.1 | + | 38479 | 1.13 | 0.000152 |
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Target: 5'- uGCCGCGUCCCCAACGUCUCGCCGGGCa -3' miRNA: 3'- -CGGCGCAGGGGUUGCAGAGCGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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