Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11429 | 3' | -61.2 | NC_003085.1 | + | 40663 | 0.67 | 0.341004 |
Target: 5'- cGCCGCGcaaCCUcGCGgagC-CGCCGGcGCa -3' miRNA: 3'- -CGGCGCag-GGGuUGCa--GaGCGGCC-CG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 42702 | 0.68 | 0.333213 |
Target: 5'- cUCGcCGUCCgCCAcgGCGcggCagGCCGGGCa -3' miRNA: 3'- cGGC-GCAGG-GGU--UGCa--GagCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 47333 | 0.68 | 0.333213 |
Target: 5'- gGCCGcCGUCCUCgGACGUguaCUUG-UGGGCg -3' miRNA: 3'- -CGGC-GCAGGGG-UUGCA---GAGCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29652 | 0.68 | 0.333213 |
Target: 5'- cGCCGCcUgCCCAcagaaGUCaUGUCGGGCg -3' miRNA: 3'- -CGGCGcAgGGGUug---CAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 28996 | 0.68 | 0.325554 |
Target: 5'- cCUGCGugugccacuUCUCCAGCGgCUCGCgCGcGGCg -3' miRNA: 3'- cGGCGC---------AGGGGUUGCaGAGCG-GC-CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29927 | 0.68 | 0.325554 |
Target: 5'- uCCGCGUCgggCGcCGUC-CGCUGGGCu -3' miRNA: 3'- cGGCGCAGgg-GUuGCAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 9725 | 0.68 | 0.325554 |
Target: 5'- cGCCuguGUGUCCUCGGCGUCauggaGuCCaGGGCg -3' miRNA: 3'- -CGG---CGCAGGGGUUGCAGag---C-GG-CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 25986 | 0.68 | 0.318026 |
Target: 5'- uGCUGaCGaaugCCUCGACG-CUgCGCUGGGCc -3' miRNA: 3'- -CGGC-GCa---GGGGUUGCaGA-GCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 9589 | 0.68 | 0.310629 |
Target: 5'- aCUGCGgguagUCCCgGACGcuUCUCGuCCGGGg -3' miRNA: 3'- cGGCGC-----AGGGgUUGC--AGAGC-GGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 38679 | 0.68 | 0.308436 |
Target: 5'- cGCUGCGcggaagagguggcaUgcCCCCAGCGUCUUcCCGGcGCc -3' miRNA: 3'- -CGGCGC--------------A--GGGGUUGCAGAGcGGCC-CG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41827 | 0.68 | 0.296231 |
Target: 5'- cGCCGCccaagcgCCCCAugaGUCcCGCCcGGCg -3' miRNA: 3'- -CGGCGca-----GGGGUug-CAGaGCGGcCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 11573 | 0.69 | 0.292014 |
Target: 5'- cGCCgucgGCGUggugcccaccagcacCUCCGACGUCUgGCCGGccaGCg -3' miRNA: 3'- -CGG----CGCA---------------GGGGUUGCAGAgCGGCC---CG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 1471 | 0.69 | 0.277625 |
Target: 5'- cGCCGCGUCCuCCcuccgcgacuugcucGAcgcggccCGUCcggCGCuCGGGCa -3' miRNA: 3'- -CGGCGCAGG-GG---------------UU-------GCAGa--GCG-GCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41032 | 0.69 | 0.269003 |
Target: 5'- cGCUgGCGUCCUCcugGGCGgCUUGgCGGGCu -3' miRNA: 3'- -CGG-CGCAGGGG---UUGCaGAGCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 40899 | 0.7 | 0.249934 |
Target: 5'- cGCCGCGaCCUCAagaccugcgugACGagCUCGCCGcGCg -3' miRNA: 3'- -CGGCGCaGGGGU-----------UGCa-GAGCGGCcCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 26024 | 0.7 | 0.249934 |
Target: 5'- -aUGCGUCCCUgcuGCGcCU-GCUGGGCg -3' miRNA: 3'- cgGCGCAGGGGu--UGCaGAgCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 7292 | 0.7 | 0.246257 |
Target: 5'- cGCCGCcaagcucgacgggaaGUCUCCGACGgccaUCGCgGaGGCg -3' miRNA: 3'- -CGGCG---------------CAGGGGUUGCag--AGCGgC-CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 10911 | 0.7 | 0.24383 |
Target: 5'- uCCGCGUCgcucaCCAGCaagggCUUGCCGGGg -3' miRNA: 3'- cGGCGCAGg----GGUUGca---GAGCGGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41368 | 0.7 | 0.24383 |
Target: 5'- gGCCGCGUCaCCC-ACGUCaugacggUGgUGGGUg -3' miRNA: 3'- -CGGCGCAG-GGGuUGCAGa------GCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 43863 | 0.7 | 0.231994 |
Target: 5'- aCCGCGUCaCUCAGCaucGUC-CGCaccaGGGCg -3' miRNA: 3'- cGGCGCAG-GGGUUG---CAGaGCGg---CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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