miRNA display CGI


Results 21 - 40 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 17646 0.66 0.398284
Target:  5'- cGCUGCGcgcUCCUCGGgugugucCGUCgcgagCgGCCGGGCc -3'
miRNA:   3'- -CGGCGC---AGGGGUU-------GCAGa----G-CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 43986 0.66 0.389609
Target:  5'- cGCCGCGUuguccgcCUCCAAC-UCcCGCacuCGGGCc -3'
miRNA:   3'- -CGGCGCA-------GGGGUUGcAGaGCG---GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 4121 0.67 0.381907
Target:  5'- cGCCGCGcugggaCUCCAGCGccgCUCuaCGGaGCg -3'
miRNA:   3'- -CGGCGCa-----GGGGUUGCa--GAGcgGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 13453 0.67 0.381907
Target:  5'- gGCCGCcaUCCgCCAagcugucgcggaGCGUUUC-CUGGGCg -3'
miRNA:   3'- -CGGCGc-AGG-GGU------------UGCAGAGcGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 5875 0.67 0.381907
Target:  5'- cGCCuGCGaCCUCugcCGUggCGCCGGGUc -3'
miRNA:   3'- -CGG-CGCaGGGGuu-GCAgaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 943 0.67 0.381907
Target:  5'- gGCCGCGUCCgggugCCAGacaGgccgCU-GCCGGGg -3'
miRNA:   3'- -CGGCGCAGG-----GGUUg--Ca---GAgCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 15286 0.67 0.373469
Target:  5'- cGCCGCG-CCC--GCGUCaUGCUggcccgGGGCg -3'
miRNA:   3'- -CGGCGCaGGGguUGCAGaGCGG------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 2835 0.67 0.373469
Target:  5'- cUCGCuGUCCCCcg-GUgUUGCCGGGa -3'
miRNA:   3'- cGGCG-CAGGGGuugCAgAGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 7265 0.67 0.373469
Target:  5'- cCCcUGUCgCCCAGCGcCUCauGCCGaGGCu -3'
miRNA:   3'- cGGcGCAG-GGGUUGCaGAG--CGGC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 25888 0.67 0.373469
Target:  5'- -aCGCGUCCuCCAGCGacaUCgcaaCGCCGcGCc -3'
miRNA:   3'- cgGCGCAGG-GGUUGC---AGa---GCGGCcCG- -5'
11429 3' -61.2 NC_003085.1 + 21427 0.67 0.37013
Target:  5'- gGCCGCGcagaacgaccucaUCCCCGuggagaacuggcugACG-UUCGCCgacaaGGGCg -3'
miRNA:   3'- -CGGCGC-------------AGGGGU--------------UGCaGAGCGG-----CCCG- -5'
11429 3' -61.2 NC_003085.1 + 23680 0.67 0.365159
Target:  5'- aGCgGCGUCCCCAccugcACGUCggacUUGCCc-GCg -3'
miRNA:   3'- -CGgCGCAGGGGU-----UGCAG----AGCGGccCG- -5'
11429 3' -61.2 NC_003085.1 + 26888 0.67 0.365159
Target:  5'- cGCCgGUGgguggaCUCAAcacCGUCUCGgCGGGCa -3'
miRNA:   3'- -CGG-CGCag----GGGUU---GCAGAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 44368 0.67 0.356978
Target:  5'- cCCGCGUCa---ACGUCacugUCGCuCGGGCu -3'
miRNA:   3'- cGGCGCAGggguUGCAG----AGCG-GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 5938 0.67 0.356978
Target:  5'- cGCCGCcuucggcgccGUUCCC---GUCcaCGCCGGGCu -3'
miRNA:   3'- -CGGCG----------CAGGGGuugCAGa-GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 44952 0.67 0.356978
Target:  5'- cGCCGUG--CCCAGCGUCUCgacucguuGCUgucuugaguuGGGCg -3'
miRNA:   3'- -CGGCGCagGGGUUGCAGAG--------CGG----------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 19477 0.67 0.348925
Target:  5'- gGCCGC-UCCCCAucCGguggaugacugCUUGCCggaGGGCu -3'
miRNA:   3'- -CGGCGcAGGGGUu-GCa----------GAGCGG---CCCG- -5'
11429 3' -61.2 NC_003085.1 + 41997 0.67 0.348925
Target:  5'- cGCCGUGUuccugCCCCGGCGg--CGUCGG-Ca -3'
miRNA:   3'- -CGGCGCA-----GGGGUUGCagaGCGGCCcG- -5'
11429 3' -61.2 NC_003085.1 + 7448 0.67 0.348925
Target:  5'- cGCCcuCGUCCgugCCGACG-C-CGCCGGGg -3'
miRNA:   3'- -CGGc-GCAGG---GGUUGCaGaGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 4482 0.67 0.344157
Target:  5'- cGCCGUGccCgCCCAACucaagacagcaacgaGUCgagaCGCUGGGCa -3'
miRNA:   3'- -CGGCGCa-G-GGGUUG---------------CAGa---GCGGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.