miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 9589 0.68 0.310629
Target:  5'- aCUGCGgguagUCCCgGACGcuUCUCGuCCGGGg -3'
miRNA:   3'- cGGCGC-----AGGGgUUGC--AGAGC-GGCCCg -5'
11429 3' -61.2 NC_003085.1 + 25986 0.68 0.318026
Target:  5'- uGCUGaCGaaugCCUCGACG-CUgCGCUGGGCc -3'
miRNA:   3'- -CGGC-GCa---GGGGUUGCaGA-GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 28996 0.68 0.325554
Target:  5'- cCUGCGugugccacuUCUCCAGCGgCUCGCgCGcGGCg -3'
miRNA:   3'- cGGCGC---------AGGGGUUGCaGAGCG-GC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 29927 0.68 0.325554
Target:  5'- uCCGCGUCgggCGcCGUC-CGCUGGGCu -3'
miRNA:   3'- cGGCGCAGgg-GUuGCAGaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 9725 0.68 0.325554
Target:  5'- cGCCuguGUGUCCUCGGCGUCauggaGuCCaGGGCg -3'
miRNA:   3'- -CGG---CGCAGGGGUUGCAGag---C-GG-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 42702 0.68 0.333213
Target:  5'- cUCGcCGUCCgCCAcgGCGcggCagGCCGGGCa -3'
miRNA:   3'- cGGC-GCAGG-GGU--UGCa--GagCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 47333 0.68 0.333213
Target:  5'- gGCCGcCGUCCUCgGACGUguaCUUG-UGGGCg -3'
miRNA:   3'- -CGGC-GCAGGGG-UUGCA---GAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 29652 0.68 0.333213
Target:  5'- cGCCGCcUgCCCAcagaaGUCaUGUCGGGCg -3'
miRNA:   3'- -CGGCGcAgGGGUug---CAGaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 40663 0.67 0.341004
Target:  5'- cGCCGCGcaaCCUcGCGgagC-CGCCGGcGCa -3'
miRNA:   3'- -CGGCGCag-GGGuUGCa--GaGCGGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 4482 0.67 0.344157
Target:  5'- cGCCGUGccCgCCCAACucaagacagcaacgaGUCgagaCGCUGGGCa -3'
miRNA:   3'- -CGGCGCa-G-GGGUUG---------------CAGa---GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 19477 0.67 0.348925
Target:  5'- gGCCGC-UCCCCAucCGguggaugacugCUUGCCggaGGGCu -3'
miRNA:   3'- -CGGCGcAGGGGUu-GCa----------GAGCGG---CCCG- -5'
11429 3' -61.2 NC_003085.1 + 41997 0.67 0.348925
Target:  5'- cGCCGUGUuccugCCCCGGCGg--CGUCGG-Ca -3'
miRNA:   3'- -CGGCGCA-----GGGGUUGCagaGCGGCCcG- -5'
11429 3' -61.2 NC_003085.1 + 7448 0.67 0.348925
Target:  5'- cGCCcuCGUCCgugCCGACG-C-CGCCGGGg -3'
miRNA:   3'- -CGGc-GCAGG---GGUUGCaGaGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 5938 0.67 0.356978
Target:  5'- cGCCGCcuucggcgccGUUCCC---GUCcaCGCCGGGCu -3'
miRNA:   3'- -CGGCG----------CAGGGGuugCAGa-GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 44368 0.67 0.356978
Target:  5'- cCCGCGUCa---ACGUCacugUCGCuCGGGCu -3'
miRNA:   3'- cGGCGCAGggguUGCAG----AGCG-GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 44952 0.67 0.356978
Target:  5'- cGCCGUG--CCCAGCGUCUCgacucguuGCUgucuugaguuGGGCg -3'
miRNA:   3'- -CGGCGCagGGGUUGCAGAG--------CGG----------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 23680 0.67 0.365159
Target:  5'- aGCgGCGUCCCCAccugcACGUCggacUUGCCc-GCg -3'
miRNA:   3'- -CGgCGCAGGGGU-----UGCAG----AGCGGccCG- -5'
11429 3' -61.2 NC_003085.1 + 26888 0.67 0.365159
Target:  5'- cGCCgGUGgguggaCUCAAcacCGUCUCGgCGGGCa -3'
miRNA:   3'- -CGG-CGCag----GGGUU---GCAGAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 21427 0.67 0.37013
Target:  5'- gGCCGCGcagaacgaccucaUCCCCGuggagaacuggcugACG-UUCGCCgacaaGGGCg -3'
miRNA:   3'- -CGGCGC-------------AGGGGU--------------UGCaGAGCGG-----CCCG- -5'
11429 3' -61.2 NC_003085.1 + 7265 0.67 0.373469
Target:  5'- cCCcUGUCgCCCAGCGcCUCauGCCGaGGCu -3'
miRNA:   3'- cGGcGCAG-GGGUUGCaGAG--CGGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.