miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 41032 0.69 0.269003
Target:  5'- cGCUgGCGUCCUCcugGGCGgCUUGgCGGGCu -3'
miRNA:   3'- -CGG-CGCAGGGG---UUGCaGAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 41827 0.68 0.296231
Target:  5'- cGCCGCccaagcgCCCCAugaGUCcCGCCcGGCg -3'
miRNA:   3'- -CGGCGca-----GGGGUug-CAGaGCGGcCCG- -5'
11429 3' -61.2 NC_003085.1 + 9725 0.68 0.325554
Target:  5'- cGCCuguGUGUCCUCGGCGUCauggaGuCCaGGGCg -3'
miRNA:   3'- -CGG---CGCAGGGGUUGCAGag---C-GG-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 29652 0.68 0.333213
Target:  5'- cGCCGCcUgCCCAcagaaGUCaUGUCGGGCg -3'
miRNA:   3'- -CGGCGcAgGGGUug---CAGaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 26888 0.67 0.365159
Target:  5'- cGCCgGUGgguggaCUCAAcacCGUCUCGgCGGGCa -3'
miRNA:   3'- -CGG-CGCag----GGGUU---GCAGAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 44368 0.67 0.356978
Target:  5'- cCCGCGUCa---ACGUCacugUCGCuCGGGCu -3'
miRNA:   3'- cGGCGCAGggguUGCAG----AGCG-GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 41997 0.67 0.348925
Target:  5'- cGCCGUGUuccugCCCCGGCGg--CGUCGG-Ca -3'
miRNA:   3'- -CGGCGCA-----GGGGUUGCagaGCGGCCcG- -5'
11429 3' -61.2 NC_003085.1 + 4482 0.67 0.344157
Target:  5'- cGCCGUGccCgCCCAACucaagacagcaacgaGUCgagaCGCUGGGCa -3'
miRNA:   3'- -CGGCGCa-G-GGGUUG---------------CAGa---GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 40663 0.67 0.341004
Target:  5'- cGCCGCGcaaCCUcGCGgagC-CGCCGGcGCa -3'
miRNA:   3'- -CGGCGCag-GGGuUGCa--GaGCGGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 17646 0.66 0.398284
Target:  5'- cGCUGCGcgcUCCUCGGgugugucCGUCgcgagCgGCCGGGCc -3'
miRNA:   3'- -CGGCGC---AGGGGUU-------GCAGa----G-CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 45618 0.66 0.400034
Target:  5'- cGCCGUgGUCCUgGAUGggcagugcgggaaugCUCGCCGuGCa -3'
miRNA:   3'- -CGGCG-CAGGGgUUGCa--------------GAGCGGCcCG- -5'
11429 3' -61.2 NC_003085.1 + 31935 0.66 0.407083
Target:  5'- cGCUGCGagCCCCAucccgaugaggaaGucCGUCaUUGCCGGGa -3'
miRNA:   3'- -CGGCGCa-GGGGU-------------U--GCAG-AGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 20938 0.66 0.40797
Target:  5'- cGCCGCGgauucgCCCUGACGgUCcacCGCCugaauGGCg -3'
miRNA:   3'- -CGGCGCa-----GGGGUUGC-AGa--GCGGc----CCG- -5'
11429 3' -61.2 NC_003085.1 + 23370 0.66 0.40797
Target:  5'- aGCCGUGUCCCaggccauGCGUCaccgUGCCuuGCg -3'
miRNA:   3'- -CGGCGCAGGGgu-----UGCAGa---GCGGccCG- -5'
11429 3' -61.2 NC_003085.1 + 6416 0.66 0.416901
Target:  5'- aGCCGU-UCCCCAGCGggccgCUCGacaCGGc- -3'
miRNA:   3'- -CGGCGcAGGGGUUGCa----GAGCg--GCCcg -5'
11429 3' -61.2 NC_003085.1 + 42219 0.66 0.416901
Target:  5'- aGCC-UGUCCCCGGgcUGUC-CGUagGGGCa -3'
miRNA:   3'- -CGGcGCAGGGGUU--GCAGaGCGg-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 19999 0.66 0.425951
Target:  5'- -aCGCG-CCC--GCGUUguugaaGCCGGGCa -3'
miRNA:   3'- cgGCGCaGGGguUGCAGag----CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 5122 0.66 0.425951
Target:  5'- gGCCGCccUCUCCcGCGUCgcCGCCcaGGCa -3'
miRNA:   3'- -CGGCGc-AGGGGuUGCAGa-GCGGc-CCG- -5'
11429 3' -61.2 NC_003085.1 + 31142 0.66 0.444396
Target:  5'- cGuuGCGgcugCCCUucgGACGgccagCGCCGGGg -3'
miRNA:   3'- -CggCGCa---GGGG---UUGCaga--GCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 38479 1.13 0.000152
Target:  5'- uGCCGCGUCCCCAACGUCUCGCCGGGCa -3'
miRNA:   3'- -CGGCGCAGGGGUUGCAGAGCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.