miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 18629 0.66 0.40797
Target:  5'- aCUGCaUCCuCCgAGCGUUUCGCCGuGCc -3'
miRNA:   3'- cGGCGcAGG-GG-UUGCAGAGCGGCcCG- -5'
11429 3' -61.2 NC_003085.1 + 26888 0.67 0.365159
Target:  5'- cGCCgGUGgguggaCUCAAcacCGUCUCGgCGGGCa -3'
miRNA:   3'- -CGG-CGCag----GGGUU---GCAGAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 21427 0.67 0.37013
Target:  5'- gGCCGCGcagaacgaccucaUCCCCGuggagaacuggcugACG-UUCGCCgacaaGGGCg -3'
miRNA:   3'- -CGGCGC-------------AGGGGU--------------UGCaGAGCGG-----CCCG- -5'
11429 3' -61.2 NC_003085.1 + 2835 0.67 0.373469
Target:  5'- cUCGCuGUCCCCcg-GUgUUGCCGGGa -3'
miRNA:   3'- cGGCG-CAGGGGuugCAgAGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 15286 0.67 0.373469
Target:  5'- cGCCGCG-CCC--GCGUCaUGCUggcccgGGGCg -3'
miRNA:   3'- -CGGCGCaGGGguUGCAGaGCGG------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 943 0.67 0.381907
Target:  5'- gGCCGCGUCCgggugCCAGacaGgccgCU-GCCGGGg -3'
miRNA:   3'- -CGGCGCAGG-----GGUUg--Ca---GAgCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 4121 0.67 0.381907
Target:  5'- cGCCGCGcugggaCUCCAGCGccgCUCuaCGGaGCg -3'
miRNA:   3'- -CGGCGCa-----GGGGUUGCa--GAGcgGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 43986 0.66 0.389609
Target:  5'- cGCCGCGUuguccgcCUCCAAC-UCcCGCacuCGGGCc -3'
miRNA:   3'- -CGGCGCA-------GGGGUUGcAGaGCG---GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 4049 0.66 0.40797
Target:  5'- aCCGCG-CCCCAuGC-UUUCGCUGacGGCg -3'
miRNA:   3'- cGGCGCaGGGGU-UGcAGAGCGGC--CCG- -5'
11429 3' -61.2 NC_003085.1 + 44368 0.67 0.356978
Target:  5'- cCCGCGUCa---ACGUCacugUCGCuCGGGCu -3'
miRNA:   3'- cGGCGCAGggguUGCAG----AGCG-GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 41997 0.67 0.348925
Target:  5'- cGCCGUGUuccugCCCCGGCGg--CGUCGG-Ca -3'
miRNA:   3'- -CGGCGCA-----GGGGUUGCagaGCGGCCcG- -5'
11429 3' -61.2 NC_003085.1 + 4482 0.67 0.344157
Target:  5'- cGCCGUGccCgCCCAACucaagacagcaacgaGUCgagaCGCUGGGCa -3'
miRNA:   3'- -CGGCGCa-G-GGGUUG---------------CAGa---GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 41368 0.7 0.24383
Target:  5'- gGCCGCGUCaCCC-ACGUCaugacggUGgUGGGUg -3'
miRNA:   3'- -CGGCGCAG-GGGuUGCAGa------GCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 7292 0.7 0.246257
Target:  5'- cGCCGCcaagcucgacgggaaGUCUCCGACGgccaUCGCgGaGGCg -3'
miRNA:   3'- -CGGCG---------------CAGGGGUUGCag--AGCGgC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 40899 0.7 0.249934
Target:  5'- cGCCGCGaCCUCAagaccugcgugACGagCUCGCCGcGCg -3'
miRNA:   3'- -CGGCGCaGGGGU-----------UGCa-GAGCGGCcCG- -5'
11429 3' -61.2 NC_003085.1 + 41032 0.69 0.269003
Target:  5'- cGCUgGCGUCCUCcugGGCGgCUUGgCGGGCu -3'
miRNA:   3'- -CGG-CGCAGGGG---UUGCaGAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 41827 0.68 0.296231
Target:  5'- cGCCGCccaagcgCCCCAugaGUCcCGCCcGGCg -3'
miRNA:   3'- -CGGCGca-----GGGGUug-CAGaGCGGcCCG- -5'
11429 3' -61.2 NC_003085.1 + 9725 0.68 0.325554
Target:  5'- cGCCuguGUGUCCUCGGCGUCauggaGuCCaGGGCg -3'
miRNA:   3'- -CGG---CGCAGGGGUUGCAGag---C-GG-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 29652 0.68 0.333213
Target:  5'- cGCCGCcUgCCCAcagaaGUCaUGUCGGGCg -3'
miRNA:   3'- -CGGCGcAgGGGUug---CAGaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 40663 0.67 0.341004
Target:  5'- cGCCGCGcaaCCUcGCGgagC-CGCCGGcGCa -3'
miRNA:   3'- -CGGCGCag-GGGuUGCa--GaGCGGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.