miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 843 0.66 0.444396
Target:  5'- -gCGCGUCUCUcACGUCgCGCUGcccgaaGGCa -3'
miRNA:   3'- cgGCGCAGGGGuUGCAGaGCGGC------CCG- -5'
11429 3' -61.2 NC_003085.1 + 943 0.67 0.381907
Target:  5'- gGCCGCGUCCgggugCCAGacaGgccgCU-GCCGGGg -3'
miRNA:   3'- -CGGCGCAGG-----GGUUg--Ca---GAgCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 1471 0.69 0.277625
Target:  5'- cGCCGCGUCCuCCcuccgcgacuugcucGAcgcggccCGUCcggCGCuCGGGCa -3'
miRNA:   3'- -CGGCGCAGG-GG---------------UU-------GCAGa--GCG-GCCCG- -5'
11429 3' -61.2 NC_003085.1 + 2835 0.67 0.373469
Target:  5'- cUCGCuGUCCCCcg-GUgUUGCCGGGa -3'
miRNA:   3'- cGGCG-CAGGGGuugCAgAGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 4049 0.66 0.40797
Target:  5'- aCCGCG-CCCCAuGC-UUUCGCUGacGGCg -3'
miRNA:   3'- cGGCGCaGGGGU-UGcAGAGCGGC--CCG- -5'
11429 3' -61.2 NC_003085.1 + 4121 0.67 0.381907
Target:  5'- cGCCGCGcugggaCUCCAGCGccgCUCuaCGGaGCg -3'
miRNA:   3'- -CGGCGCa-----GGGGUUGCa--GAGcgGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 4482 0.67 0.344157
Target:  5'- cGCCGUGccCgCCCAACucaagacagcaacgaGUCgagaCGCUGGGCa -3'
miRNA:   3'- -CGGCGCa-G-GGGUUG---------------CAGa---GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 5122 0.66 0.425951
Target:  5'- gGCCGCccUCUCCcGCGUCgcCGCCcaGGCa -3'
miRNA:   3'- -CGGCGc-AGGGGuUGCAGa-GCGGc-CCG- -5'
11429 3' -61.2 NC_003085.1 + 5875 0.67 0.381907
Target:  5'- cGCCuGCGaCCUCugcCGUggCGCCGGGUc -3'
miRNA:   3'- -CGG-CGCaGGGGuu-GCAgaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 5938 0.67 0.356978
Target:  5'- cGCCGCcuucggcgccGUUCCC---GUCcaCGCCGGGCu -3'
miRNA:   3'- -CGGCG----------CAGGGGuugCAGa-GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 6416 0.66 0.416901
Target:  5'- aGCCGU-UCCCCAGCGggccgCUCGacaCGGc- -3'
miRNA:   3'- -CGGCGcAGGGGUUGCa----GAGCg--GCCcg -5'
11429 3' -61.2 NC_003085.1 + 7265 0.67 0.373469
Target:  5'- cCCcUGUCgCCCAGCGcCUCauGCCGaGGCu -3'
miRNA:   3'- cGGcGCAG-GGGUUGCaGAG--CGGC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 7292 0.7 0.246257
Target:  5'- cGCCGCcaagcucgacgggaaGUCUCCGACGgccaUCGCgGaGGCg -3'
miRNA:   3'- -CGGCG---------------CAGGGGUUGCag--AGCGgC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 7448 0.67 0.348925
Target:  5'- cGCCcuCGUCCgugCCGACG-C-CGCCGGGg -3'
miRNA:   3'- -CGGc-GCAGG---GGUUGCaGaGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 7763 0.66 0.425951
Target:  5'- gGCCGUGUCaUCAGCca-UCGUCGcGGCg -3'
miRNA:   3'- -CGGCGCAGgGGUUGcagAGCGGC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 8134 0.73 0.141785
Target:  5'- gGCCaaGUCCCCGggcuucgGCGUgUCGgUGGGCg -3'
miRNA:   3'- -CGGcgCAGGGGU-------UGCAgAGCgGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 9082 0.66 0.444396
Target:  5'- gGCCaGCG-CCagaGGCGUCagCGCCgcGGGCa -3'
miRNA:   3'- -CGG-CGCaGGgg-UUGCAGa-GCGG--CCCG- -5'
11429 3' -61.2 NC_003085.1 + 9589 0.68 0.310629
Target:  5'- aCUGCGgguagUCCCgGACGcuUCUCGuCCGGGg -3'
miRNA:   3'- cGGCGC-----AGGGgUUGC--AGAGC-GGCCCg -5'
11429 3' -61.2 NC_003085.1 + 9725 0.68 0.325554
Target:  5'- cGCCuguGUGUCCUCGGCGUCauggaGuCCaGGGCg -3'
miRNA:   3'- -CGG---CGCAGGGGUUGCAGag---C-GG-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 10911 0.7 0.24383
Target:  5'- uCCGCGUCgcucaCCAGCaagggCUUGCCGGGg -3'
miRNA:   3'- cGGCGCAGg----GGUUGca---GAGCGGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.