miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 11573 0.69 0.292014
Target:  5'- cGCCgucgGCGUggugcccaccagcacCUCCGACGUCUgGCCGGccaGCg -3'
miRNA:   3'- -CGG----CGCA---------------GGGGUUGCAGAgCGGCC---CG- -5'
11429 3' -61.2 NC_003085.1 + 11785 0.73 0.138445
Target:  5'- cGCCGCG-CUCCGGgcgUGUCggcugccccaUCGCCGGGUg -3'
miRNA:   3'- -CGGCGCaGGGGUU---GCAG----------AGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 13453 0.67 0.381907
Target:  5'- gGCCGCcaUCCgCCAagcugucgcggaGCGUUUC-CUGGGCg -3'
miRNA:   3'- -CGGCGc-AGG-GGU------------UGCAGAGcGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 15286 0.67 0.373469
Target:  5'- cGCCGCG-CCC--GCGUCaUGCUggcccgGGGCg -3'
miRNA:   3'- -CGGCGCaGGGguUGCAGaGCGG------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 17612 0.66 0.444396
Target:  5'- cGCCGUG-CCUUc-CGUCgcgUGCCGGaGCa -3'
miRNA:   3'- -CGGCGCaGGGGuuGCAGa--GCGGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 17646 0.66 0.398284
Target:  5'- cGCUGCGcgcUCCUCGGgugugucCGUCgcgagCgGCCGGGCc -3'
miRNA:   3'- -CGGCGC---AGGGGUU-------GCAGa----G-CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 18299 0.66 0.425041
Target:  5'- gGCgGUGcacgCCCCGGCG-CUgGCCguccgaaGGGCa -3'
miRNA:   3'- -CGgCGCa---GGGGUUGCaGAgCGG-------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 18629 0.66 0.40797
Target:  5'- aCUGCaUCCuCCgAGCGUUUCGCCGuGCc -3'
miRNA:   3'- cGGCGcAGG-GG-UUGCAGAGCGGCcCG- -5'
11429 3' -61.2 NC_003085.1 + 18846 0.66 0.438815
Target:  5'- cGCCGCG-CUgaaguucguguucggCCAGCGaaggCUgauggaGCCGGGCg -3'
miRNA:   3'- -CGGCGCaGG---------------GGUUGCa---GAg-----CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 19117 0.73 0.138445
Target:  5'- cGCCGCagugcgCCCCGcgacaGCGUC-CGCCaGGGCc -3'
miRNA:   3'- -CGGCGca----GGGGU-----UGCAGaGCGG-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 19477 0.67 0.348925
Target:  5'- gGCCGC-UCCCCAucCGguggaugacugCUUGCCggaGGGCu -3'
miRNA:   3'- -CGGCGcAGGGGUu-GCa----------GAGCGG---CCCG- -5'
11429 3' -61.2 NC_003085.1 + 19999 0.66 0.425951
Target:  5'- -aCGCG-CCC--GCGUUguugaaGCCGGGCa -3'
miRNA:   3'- cgGCGCaGGGguUGCAGag----CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 20068 0.75 0.100073
Target:  5'- gGCCGCGcuggcgcagcaacUCCgCCAugGCGUUcUGCCGGGCg -3'
miRNA:   3'- -CGGCGC-------------AGG-GGU--UGCAGaGCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 20357 0.77 0.070327
Target:  5'- cGCCGCGUCgCCGcUG-CUgaCGCCGGGCa -3'
miRNA:   3'- -CGGCGCAGgGGUuGCaGA--GCGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 20938 0.66 0.40797
Target:  5'- cGCCGCGgauucgCCCUGACGgUCcacCGCCugaauGGCg -3'
miRNA:   3'- -CGGCGCa-----GGGGUUGC-AGa--GCGGc----CCG- -5'
11429 3' -61.2 NC_003085.1 + 21427 0.67 0.37013
Target:  5'- gGCCGCGcagaacgaccucaUCCCCGuggagaacuggcugACG-UUCGCCgacaaGGGCg -3'
miRNA:   3'- -CGGCGC-------------AGGGGU--------------UGCaGAGCGG-----CCCG- -5'
11429 3' -61.2 NC_003085.1 + 21883 0.66 0.444396
Target:  5'- gGCCGUGUCCCUccagGACuUCgcggCGCUGcGGa -3'
miRNA:   3'- -CGGCGCAGGGG----UUGcAGa---GCGGC-CCg -5'
11429 3' -61.2 NC_003085.1 + 23370 0.66 0.40797
Target:  5'- aGCCGUGUCCCaggccauGCGUCaccgUGCCuuGCg -3'
miRNA:   3'- -CGGCGCAGGGgu-----UGCAGa---GCGGccCG- -5'
11429 3' -61.2 NC_003085.1 + 23680 0.67 0.365159
Target:  5'- aGCgGCGUCCCCAccugcACGUCggacUUGCCc-GCg -3'
miRNA:   3'- -CGgCGCAGGGGU-----UGCAG----AGCGGccCG- -5'
11429 3' -61.2 NC_003085.1 + 25402 0.71 0.189414
Target:  5'- aGCCGCGgcUUCCC-GCGcUUCGCCaGGCg -3'
miRNA:   3'- -CGGCGC--AGGGGuUGCaGAGCGGcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.