Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11429 | 3' | -61.2 | NC_003085.1 | + | 9082 | 0.66 | 0.444396 |
Target: 5'- gGCCaGCG-CCagaGGCGUCagCGCCgcGGGCa -3' miRNA: 3'- -CGG-CGCaGGgg-UUGCAGa-GCGG--CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 5938 | 0.67 | 0.356978 |
Target: 5'- cGCCGCcuucggcgccGUUCCC---GUCcaCGCCGGGCu -3' miRNA: 3'- -CGGCG----------CAGGGGuugCAGa-GCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 19477 | 0.67 | 0.348925 |
Target: 5'- gGCCGC-UCCCCAucCGguggaugacugCUUGCCggaGGGCu -3' miRNA: 3'- -CGGCGcAGGGGUu-GCa----------GAGCGG---CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 38479 | 1.13 | 0.000152 |
Target: 5'- uGCCGCGUCCCCAACGUCUCGCCGGGCa -3' miRNA: 3'- -CGGCGCAGGGGUUGCAGAGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 42219 | 0.66 | 0.416901 |
Target: 5'- aGCC-UGUCCCCGGgcUGUC-CGUagGGGCa -3' miRNA: 3'- -CGGcGCAGGGGUU--GCAGaGCGg-CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 6416 | 0.66 | 0.416901 |
Target: 5'- aGCCGU-UCCCCAGCGggccgCUCGacaCGGc- -3' miRNA: 3'- -CGGCGcAGGGGUUGCa----GAGCg--GCCcg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 20938 | 0.66 | 0.40797 |
Target: 5'- cGCCGCGgauucgCCCUGACGgUCcacCGCCugaauGGCg -3' miRNA: 3'- -CGGCGCa-----GGGGUUGC-AGa--GCGGc----CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 31935 | 0.66 | 0.407083 |
Target: 5'- cGCUGCGagCCCCAucccgaugaggaaGucCGUCaUUGCCGGGa -3' miRNA: 3'- -CGGCGCa-GGGGU-------------U--GCAG-AGCGGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 5875 | 0.67 | 0.381907 |
Target: 5'- cGCCuGCGaCCUCugcCGUggCGCCGGGUc -3' miRNA: 3'- -CGG-CGCaGGGGuu-GCAgaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 44952 | 0.67 | 0.356978 |
Target: 5'- cGCCGUG--CCCAGCGUCUCgacucguuGCUgucuugaguuGGGCg -3' miRNA: 3'- -CGGCGCagGGGUUGCAGAG--------CGG----------CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 7265 | 0.67 | 0.373469 |
Target: 5'- cCCcUGUCgCCCAGCGcCUCauGCCGaGGCu -3' miRNA: 3'- cGGcGCAG-GGGUUGCaGAG--CGGC-CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 17646 | 0.66 | 0.398284 |
Target: 5'- cGCUGCGcgcUCCUCGGgugugucCGUCgcgagCgGCCGGGCc -3' miRNA: 3'- -CGGCGC---AGGGGUU-------GCAGa----G-CGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 31142 | 0.66 | 0.444396 |
Target: 5'- cGuuGCGgcugCCCUucgGACGgccagCGCCGGGg -3' miRNA: 3'- -CggCGCa---GGGG---UUGCaga--GCGGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 25888 | 0.67 | 0.373469 |
Target: 5'- -aCGCGUCCuCCAGCGacaUCgcaaCGCCGcGCc -3' miRNA: 3'- cgGCGCAGG-GGUUGC---AGa---GCGGCcCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 5122 | 0.66 | 0.425951 |
Target: 5'- gGCCGCccUCUCCcGCGUCgcCGCCcaGGCa -3' miRNA: 3'- -CGGCGc-AGGGGuUGCAGa-GCGGc-CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 45618 | 0.66 | 0.400034 |
Target: 5'- cGCCGUgGUCCUgGAUGggcagugcgggaaugCUCGCCGuGCa -3' miRNA: 3'- -CGGCG-CAGGGgUUGCa--------------GAGCGGCcCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 23680 | 0.67 | 0.365159 |
Target: 5'- aGCgGCGUCCCCAccugcACGUCggacUUGCCc-GCg -3' miRNA: 3'- -CGgCGCAGGGGU-----UGCAG----AGCGGccCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 7448 | 0.67 | 0.348925 |
Target: 5'- cGCCcuCGUCCgugCCGACG-C-CGCCGGGg -3' miRNA: 3'- -CGGc-GCAGG---GGUUGCaGaGCGGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 19999 | 0.66 | 0.425951 |
Target: 5'- -aCGCG-CCC--GCGUUguugaaGCCGGGCa -3' miRNA: 3'- cgGCGCaGGGguUGCAGag----CGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 23370 | 0.66 | 0.40797 |
Target: 5'- aGCCGUGUCCCaggccauGCGUCaccgUGCCuuGCg -3' miRNA: 3'- -CGGCGCAGGGgu-----UGCAGa---GCGGccCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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