Results 41 - 60 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11429 | 3' | -61.2 | NC_003085.1 | + | 25888 | 0.67 | 0.373469 |
Target: 5'- -aCGCGUCCuCCAGCGacaUCgcaaCGCCGcGCc -3' miRNA: 3'- cgGCGCAGG-GGUUGC---AGa---GCGGCcCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 25986 | 0.68 | 0.318026 |
Target: 5'- uGCUGaCGaaugCCUCGACG-CUgCGCUGGGCc -3' miRNA: 3'- -CGGC-GCa---GGGGUUGCaGA-GCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 26024 | 0.7 | 0.249934 |
Target: 5'- -aUGCGUCCCUgcuGCGcCU-GCUGGGCg -3' miRNA: 3'- cgGCGCAGGGGu--UGCaGAgCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 26888 | 0.67 | 0.365159 |
Target: 5'- cGCCgGUGgguggaCUCAAcacCGUCUCGgCGGGCa -3' miRNA: 3'- -CGG-CGCag----GGGUU---GCAGAGCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 28996 | 0.68 | 0.325554 |
Target: 5'- cCUGCGugugccacuUCUCCAGCGgCUCGCgCGcGGCg -3' miRNA: 3'- cGGCGC---------AGGGGUUGCaGAGCG-GC-CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29524 | 0.77 | 0.076378 |
Target: 5'- -gCGCGUCaCCAGCGUCUUGgCgCGGGCg -3' miRNA: 3'- cgGCGCAGgGGUUGCAGAGC-G-GCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29652 | 0.68 | 0.333213 |
Target: 5'- cGCCGCcUgCCCAcagaaGUCaUGUCGGGCg -3' miRNA: 3'- -CGGCGcAgGGGUug---CAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29927 | 0.68 | 0.325554 |
Target: 5'- uCCGCGUCgggCGcCGUC-CGCUGGGCu -3' miRNA: 3'- cGGCGCAGgg-GUuGCAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 30748 | 0.71 | 0.189414 |
Target: 5'- aGgCGCGUCCCgucuCGUCagGCgGGGCg -3' miRNA: 3'- -CgGCGCAGGGguu-GCAGagCGgCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 31142 | 0.66 | 0.444396 |
Target: 5'- cGuuGCGgcugCCCUucgGACGgccagCGCCGGGg -3' miRNA: 3'- -CggCGCa---GGGG---UUGCaga--GCGGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 31935 | 0.66 | 0.407083 |
Target: 5'- cGCUGCGagCCCCAucccgaugaggaaGucCGUCaUUGCCGGGa -3' miRNA: 3'- -CGGCGCa-GGGGU-------------U--GCAG-AGCGGCCCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 38479 | 1.13 | 0.000152 |
Target: 5'- uGCCGCGUCCCCAACGUCUCGCCGGGCa -3' miRNA: 3'- -CGGCGCAGGGGUUGCAGAGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 38679 | 0.68 | 0.308436 |
Target: 5'- cGCUGCGcggaagagguggcaUgcCCCCAGCGUCUUcCCGGcGCc -3' miRNA: 3'- -CGGCGC--------------A--GGGGUUGCAGAGcGGCC-CG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 40572 | 0.66 | 0.40797 |
Target: 5'- gGCCGCGguggaCCCCAAgugcagcauUG-C-CGaCCGGGCg -3' miRNA: 3'- -CGGCGCa----GGGGUU---------GCaGaGC-GGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 40663 | 0.67 | 0.341004 |
Target: 5'- cGCCGCGcaaCCUcGCGgagC-CGCCGGcGCa -3' miRNA: 3'- -CGGCGCag-GGGuUGCa--GaGCGGCC-CG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 40899 | 0.7 | 0.249934 |
Target: 5'- cGCCGCGaCCUCAagaccugcgugACGagCUCGCCGcGCg -3' miRNA: 3'- -CGGCGCaGGGGU-----------UGCa-GAGCGGCcCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41032 | 0.69 | 0.269003 |
Target: 5'- cGCUgGCGUCCUCcugGGCGgCUUGgCGGGCu -3' miRNA: 3'- -CGG-CGCAGGGG---UUGCaGAGCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41368 | 0.7 | 0.24383 |
Target: 5'- gGCCGCGUCaCCC-ACGUCaugacggUGgUGGGUg -3' miRNA: 3'- -CGGCGCAG-GGGuUGCAGa------GCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41827 | 0.68 | 0.296231 |
Target: 5'- cGCCGCccaagcgCCCCAugaGUCcCGCCcGGCg -3' miRNA: 3'- -CGGCGca-----GGGGUug-CAGaGCGGcCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 41997 | 0.67 | 0.348925 |
Target: 5'- cGCCGUGUuccugCCCCGGCGg--CGUCGG-Ca -3' miRNA: 3'- -CGGCGCA-----GGGGUUGCagaGCGGCCcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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