miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 44154 0.68 0.427578
Target:  5'- uCGCcUUC-AG-GACGGCGCGCGCCUUc -3'
miRNA:   3'- -GUGuAGGcUCuCUGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 1409 0.68 0.422006
Target:  5'- aGCGUCCGgaagacguucgucgaAGAGGCGAUGaagGCuGCUCCg -3'
miRNA:   3'- gUGUAGGC---------------UCUCUGCUGCg--CG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 7454 0.68 0.418315
Target:  5'- cCACAUgCCcc-GGugGGCGuCGCGCCUCa -3'
miRNA:   3'- -GUGUA-GGcucUCugCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 47896 0.68 0.418315
Target:  5'- cCGCG-CCGcacuGcAGGCGACGCGCacgGCCUCg -3'
miRNA:   3'- -GUGUaGGCu---C-UCUGCUGCGCG---CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 46118 0.68 0.409175
Target:  5'- gGCGUCgGGGAGcgucgucuguGCGGCGaccaGCGCCUg -3'
miRNA:   3'- gUGUAGgCUCUC----------UGCUGCg---CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 45568 0.69 0.403751
Target:  5'- uCGCAgcaCGAGcagugccaccgcgacAGACGGCGgGCGCgCCg -3'
miRNA:   3'- -GUGUag-GCUC---------------UCUGCUGCgCGCGgGG- -5'
11430 3' -58.4 NC_003085.1 + 25615 0.69 0.40016
Target:  5'- aGCGcgaCGAggagGAGACGACGaaggccggGCGCCCCg -3'
miRNA:   3'- gUGUag-GCU----CUCUGCUGCg-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45043 0.69 0.391273
Target:  5'- gCACcgUCGGGcaccGGAguaGAUGCGCGCCCa -3'
miRNA:   3'- -GUGuaGGCUC----UCUg--CUGCGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 14199 0.69 0.386003
Target:  5'- aGCGUCCGGGcuGCGAcaagccCGCGCGCaagcggaagcaggggCCCg -3'
miRNA:   3'- gUGUAGGCUCucUGCU------GCGCGCG---------------GGG- -5'
11430 3' -58.4 NC_003085.1 + 19354 0.69 0.382516
Target:  5'- gGCGUCCGuguagaGGAGGCGGcCG-GCGUCCUu -3'
miRNA:   3'- gUGUAGGC------UCUCUGCU-GCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 42233 0.69 0.382516
Target:  5'- uCACGUCCcacGGGACGGCuCGCGCUacuCCa -3'
miRNA:   3'- -GUGUAGGcu-CUCUGCUGcGCGCGG---GG- -5'
11430 3' -58.4 NC_003085.1 + 7409 0.69 0.382516
Target:  5'- gCACgaGUCCGAcuGGGGCccucccgggaaGACGCGCGUCuCCa -3'
miRNA:   3'- -GUG--UAGGCU--CUCUG-----------CUGCGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 43113 0.69 0.382516
Target:  5'- gCACG-CCGGGAacagccuuGGCGuagaGCGCGCCCa -3'
miRNA:   3'- -GUGUaGGCUCU--------CUGCug--CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 34893 0.69 0.365397
Target:  5'- uCACAUucaCCGAGAuaGGCGugGCG-GCCUa -3'
miRNA:   3'- -GUGUA---GGCUCU--CUGCugCGCgCGGGg -5'
11430 3' -58.4 NC_003085.1 + 17749 0.69 0.362037
Target:  5'- cCGCcUUCGGGAGAUGGCGCGagagauugcugagGCCCg -3'
miRNA:   3'- -GUGuAGGCUCUCUGCUGCGCg------------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 11762 0.69 0.357038
Target:  5'- aCGCGUCuaCGAcGGuacGGCGGCGcCGCGCUCCg -3'
miRNA:   3'- -GUGUAG--GCU-CU---CUGCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45968 0.69 0.357038
Target:  5'- aGCGUCgccuUGGGGcGGCaGAUGCGCGCCUCu -3'
miRNA:   3'- gUGUAG----GCUCU-CUG-CUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 33205 0.69 0.357038
Target:  5'- gGCGUCCuGGAGGCGGCG-GCGCa-- -3'
miRNA:   3'- gUGUAGGcUCUCUGCUGCgCGCGggg -5'
11430 3' -58.4 NC_003085.1 + 4020 0.69 0.355383
Target:  5'- gGCAgaguugguggugCCGu--GACGACGCcaccGCGCCCCa -3'
miRNA:   3'- gUGUa-----------GGCucuCUGCUGCG----CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 188 0.7 0.348815
Target:  5'- aGCAUCUcGGAGugGACGCgGCGCg-- -3'
miRNA:   3'- gUGUAGGcUCUCugCUGCG-CGCGggg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.