miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 48734 0.67 0.505725
Target:  5'- uCGCcuGUCCGuGAG-CGGCGCGUcagGCgCCa -3'
miRNA:   3'- -GUG--UAGGCuCUCuGCUGCGCG---CGgGG- -5'
11430 3' -58.4 NC_003085.1 + 11357 0.67 0.504709
Target:  5'- gCACcUCCGAGAcgaugguGGCGGCGCcggacaccuGCGCUgCCg -3'
miRNA:   3'- -GUGuAGGCUCU-------CUGCUGCG---------CGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 16394 0.67 0.4956
Target:  5'- gCACGUCCu---GGCGAUGCagcaagguaGCGUCCCa -3'
miRNA:   3'- -GUGUAGGcucuCUGCUGCG---------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 43874 0.67 0.4956
Target:  5'- uGCAUCCGGGcaaguaGugGCGUGCCg- -3'
miRNA:   3'- gUGUAGGCUCucug--CugCGCGCGGgg -5'
11430 3' -58.4 NC_003085.1 + 48953 0.67 0.4956
Target:  5'- gCGCAUCCGGuccGGCc-CGCGCGCCUUc -3'
miRNA:   3'- -GUGUAGGCUcu-CUGcuGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 7260 0.67 0.485569
Target:  5'- gACAggcUCUGggugaaGGAGACGugGCGCaccGCCgCCa -3'
miRNA:   3'- gUGU---AGGC------UCUCUGCugCGCG---CGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 42231 0.67 0.475635
Target:  5'- gGCuGUCCGuAGGGGCaGCGCuGCGCCauCCa -3'
miRNA:   3'- gUG-UAGGC-UCUCUGcUGCG-CGCGG--GG- -5'
11430 3' -58.4 NC_003085.1 + 19074 0.67 0.475635
Target:  5'- aGCAggcgCCGGGcccGGACGGaGUGCGCCgCa -3'
miRNA:   3'- gUGUa---GGCUC---UCUGCUgCGCGCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 38072 0.67 0.475635
Target:  5'- uGCGUCgCG-GAGACGGCaGCGCagguguccggcGCCgCCa -3'
miRNA:   3'- gUGUAG-GCuCUCUGCUG-CGCG-----------CGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 45329 0.67 0.469723
Target:  5'- uCGC-UCCGuAGAG-CGGCGCuggagucccagcgcgGCGCCCa -3'
miRNA:   3'- -GUGuAGGC-UCUCuGCUGCG---------------CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 42561 0.67 0.465803
Target:  5'- gCGCGggCGAGGGcUGACGCGaugGCCUCa -3'
miRNA:   3'- -GUGUagGCUCUCuGCUGCGCg--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 37363 0.67 0.456077
Target:  5'- gGCGUCCGAcuuGCG-CGCGUcacccGCCCCg -3'
miRNA:   3'- gUGUAGGCUcucUGCuGCGCG-----CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 19521 0.67 0.456077
Target:  5'- aGCuuUUCGAGcAGcccaGCgGACGCGCGCCCg -3'
miRNA:   3'- gUGu-AGGCUC-UC----UG-CUGCGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 3566 0.67 0.456077
Target:  5'- gGCggCCGGGcGGCaa-GCGCGCCUCg -3'
miRNA:   3'- gUGuaGGCUCuCUGcugCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 37132 0.67 0.456077
Target:  5'- uCACG-CCGGGcacGGCGACgGCGgGCaCCCu -3'
miRNA:   3'- -GUGUaGGCUCu--CUGCUG-CGCgCG-GGG- -5'
11430 3' -58.4 NC_003085.1 + 39114 0.67 0.456077
Target:  5'- aGCGUCCGcggugccucccgGGAGGCGACGUggcggGgGCCgCa -3'
miRNA:   3'- gUGUAGGC------------UCUCUGCUGCG-----CgCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 27049 0.67 0.455111
Target:  5'- --aGUCCGGGGucaccucGAUGGacuCGaCGCGCCCCg -3'
miRNA:   3'- gugUAGGCUCU-------CUGCU---GC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 23350 0.68 0.446463
Target:  5'- gCGCcgCCGGccGcCGAgGCGCaGCCCCa -3'
miRNA:   3'- -GUGuaGGCUcuCuGCUgCGCG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 35621 0.68 0.446463
Target:  5'- gCACAUCCGGcacuucccuGGGCGGCGUcugcacgucaugGCGCCaCCu -3'
miRNA:   3'- -GUGUAGGCUc--------UCUGCUGCG------------CGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 21986 0.68 0.431317
Target:  5'- cCACAggCCGAcGAGGUGGCcucccgcacgaaacuGCGCGCCCa -3'
miRNA:   3'- -GUGUa-GGCU-CUCUGCUG---------------CGCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.