miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 49309 0.7 0.317285
Target:  5'- gGCGUcCCGGGAGGCGACcucccaGCucCGUCCCg -3'
miRNA:   3'- gUGUA-GGCUCUCUGCUG------CGc-GCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 19197 0.7 0.324962
Target:  5'- uCACGUCCGccuGGGGCGGCGggggcuggGCGCCgCg -3'
miRNA:   3'- -GUGUAGGCu--CUCUGCUGCg-------CGCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 5214 0.7 0.324962
Target:  5'- --aGUCCGAGc-GCGACGCG-GCCCg -3'
miRNA:   3'- gugUAGGCUCucUGCUGCGCgCGGGg -5'
11430 3' -58.4 NC_003085.1 + 32844 0.7 0.332776
Target:  5'- ----cCCGAGAGGC--CGCGCGCCgCg -3'
miRNA:   3'- guguaGGCUCUCUGcuGCGCGCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 3706 0.7 0.340727
Target:  5'- cCGCGUCCGgugcugguGGuGACGACGCagGCaGCaCCCg -3'
miRNA:   3'- -GUGUAGGC--------UCuCUGCUGCG--CG-CG-GGG- -5'
11430 3' -58.4 NC_003085.1 + 891 0.7 0.340727
Target:  5'- gGCGUCCGAGGGGCauccCGUGCcaaCCCg -3'
miRNA:   3'- gUGUAGGCUCUCUGcu--GCGCGcg-GGG- -5'
11430 3' -58.4 NC_003085.1 + 22344 0.7 0.348815
Target:  5'- gGCGUCUGc--GACGACGCGgaaaCGUCCCa -3'
miRNA:   3'- gUGUAGGCucuCUGCUGCGC----GCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 188 0.7 0.348815
Target:  5'- aGCAUCUcGGAGugGACGCgGCGCg-- -3'
miRNA:   3'- gUGUAGGcUCUCugCUGCG-CGCGggg -5'
11430 3' -58.4 NC_003085.1 + 4020 0.69 0.355383
Target:  5'- gGCAgaguugguggugCCGu--GACGACGCcaccGCGCCCCa -3'
miRNA:   3'- gUGUa-----------GGCucuCUGCUGCG----CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 11762 0.69 0.357038
Target:  5'- aCGCGUCuaCGAcGGuacGGCGGCGcCGCGCUCCg -3'
miRNA:   3'- -GUGUAG--GCU-CU---CUGCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 33205 0.69 0.357038
Target:  5'- gGCGUCCuGGAGGCGGCG-GCGCa-- -3'
miRNA:   3'- gUGUAGGcUCUCUGCUGCgCGCGggg -5'
11430 3' -58.4 NC_003085.1 + 45968 0.69 0.357038
Target:  5'- aGCGUCgccuUGGGGcGGCaGAUGCGCGCCUCu -3'
miRNA:   3'- gUGUAG----GCUCU-CUG-CUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 17749 0.69 0.362037
Target:  5'- cCGCcUUCGGGAGAUGGCGCGagagauugcugagGCCCg -3'
miRNA:   3'- -GUGuAGGCUCUCUGCUGCGCg------------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 34893 0.69 0.365397
Target:  5'- uCACAUucaCCGAGAuaGGCGugGCG-GCCUa -3'
miRNA:   3'- -GUGUA---GGCUCU--CUGCugCGCgCGGGg -5'
11430 3' -58.4 NC_003085.1 + 42233 0.69 0.382516
Target:  5'- uCACGUCCcacGGGACGGCuCGCGCUacuCCa -3'
miRNA:   3'- -GUGUAGGcu-CUCUGCUGcGCGCGG---GG- -5'
11430 3' -58.4 NC_003085.1 + 43113 0.69 0.382516
Target:  5'- gCACG-CCGGGAacagccuuGGCGuagaGCGCGCCCa -3'
miRNA:   3'- -GUGUaGGCUCU--------CUGCug--CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 19354 0.69 0.382516
Target:  5'- gGCGUCCGuguagaGGAGGCGGcCG-GCGUCCUu -3'
miRNA:   3'- gUGUAGGC------UCUCUGCU-GCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 7409 0.69 0.382516
Target:  5'- gCACgaGUCCGAcuGGGGCccucccgggaaGACGCGCGUCuCCa -3'
miRNA:   3'- -GUG--UAGGCU--CUCUG-----------CUGCGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 14199 0.69 0.386003
Target:  5'- aGCGUCCGGGcuGCGAcaagccCGCGCGCaagcggaagcaggggCCCg -3'
miRNA:   3'- gUGUAGGCUCucUGCU------GCGCGCG---------------GGG- -5'
11430 3' -58.4 NC_003085.1 + 45043 0.69 0.391273
Target:  5'- gCACcgUCGGGcaccGGAguaGAUGCGCGCCCa -3'
miRNA:   3'- -GUGuaGGCUC----UCUg--CUGCGCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.